Hb_061466_020

Information

Type -
Description -
Location Contig61466: 1544-1903
Sequence    

Annotation

kegg
ID cit:102617676
description putative ribonuclease H protein At1g65750-like
nr
ID XP_006475107.1
description PREDICTED: putative ribonuclease H protein At1g65750-like [Citrus sinensis]
swissprot
ID -
description -
trembl
ID B9SG51
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1155880 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_061466_020 0.0 - - PREDICTED: putative ribonuclease H protein At1g65750-like [Citrus sinensis]
2 Hb_015928_020 0.1632067864 - - PREDICTED: pentatricopeptide repeat-containing protein At5g66520-like [Jatropha curcas]
3 Hb_000997_010 0.1687710605 - - PREDICTED: FHA domain-containing protein At4g14490 isoform X2 [Jatropha curcas]
4 Hb_014361_050 0.1734707728 - - PREDICTED: uncharacterized protein ycf36 isoform X1 [Jatropha curcas]
5 Hb_167508_010 0.1791999604 - - hypothetical protein POPTR_0001s27330g [Populus trichocarpa]
6 Hb_129459_010 0.1799224649 - - PREDICTED: pentatricopeptide repeat-containing protein At4g18840-like [Populus euphratica]
7 Hb_005517_010 0.1946440126 - - Chorismate mutase, chloroplast precursor, putative [Ricinus communis]
8 Hb_006286_010 0.2273301722 - - hypothetical protein PRUPE_ppa017148mg [Prunus persica]
9 Hb_161023_010 0.2285140941 - - PREDICTED: uncharacterized protein LOC105639929 [Jatropha curcas]
10 Hb_005155_020 0.2316240391 - - -
11 Hb_012107_070 0.2316780892 - - -
12 Hb_000189_430 0.2364026653 - - unnamed protein product [Vitis vinifera]
13 Hb_001214_170 0.2378406243 - - pyruvate kinase family protein [Medicago truncatula]
14 Hb_011161_030 0.2449513954 - - PREDICTED: uncharacterized protein LOC105638906 [Jatropha curcas]
15 Hb_036693_010 0.2451639626 - - -
16 Hb_099990_030 0.2525908064 - - NBS-LRR resistance protein RGH1 [Manihot esculenta]
17 Hb_074184_010 0.2539628234 - - eukaryotic translation initiation factor 3 subunit, putative [Ricinus communis]
18 Hb_055339_010 0.2556411027 - - EARLY-RESPONSIVE TO DEHYDRATION 7 family protein [Populus trichocarpa]
19 Hb_004994_130 0.2585155832 transcription factor TF Family: MYB PREDICTED: myb-like protein M [Jatropha curcas]
20 Hb_160233_020 0.2656631271 - - -

Gene co-expression network

sample Hb_061466_020 Hb_061466_020 Hb_015928_020 Hb_015928_020 Hb_061466_020--Hb_015928_020 Hb_000997_010 Hb_000997_010 Hb_061466_020--Hb_000997_010 Hb_014361_050 Hb_014361_050 Hb_061466_020--Hb_014361_050 Hb_167508_010 Hb_167508_010 Hb_061466_020--Hb_167508_010 Hb_129459_010 Hb_129459_010 Hb_061466_020--Hb_129459_010 Hb_005517_010 Hb_005517_010 Hb_061466_020--Hb_005517_010 Hb_015928_020--Hb_014361_050 Hb_015928_020--Hb_000997_010 Hb_008203_020 Hb_008203_020 Hb_015928_020--Hb_008203_020 Hb_074184_010 Hb_074184_010 Hb_015928_020--Hb_074184_010 Hb_006286_010 Hb_006286_010 Hb_015928_020--Hb_006286_010 Hb_000997_010--Hb_014361_050 Hb_076233_020 Hb_076233_020 Hb_000997_010--Hb_076233_020 Hb_055339_010 Hb_055339_010 Hb_000997_010--Hb_055339_010 Hb_004570_050 Hb_004570_050 Hb_000997_010--Hb_004570_050 Hb_014361_050--Hb_076233_020 Hb_014361_050--Hb_006286_010 Hb_014361_050--Hb_055339_010 Hb_000003_140 Hb_000003_140 Hb_167508_010--Hb_000003_140 Hb_001214_170 Hb_001214_170 Hb_167508_010--Hb_001214_170 Hb_167508_010--Hb_129459_010 Hb_099990_030 Hb_099990_030 Hb_167508_010--Hb_099990_030 Hb_000189_430 Hb_000189_430 Hb_167508_010--Hb_000189_430 Hb_001138_030 Hb_001138_030 Hb_129459_010--Hb_001138_030 Hb_011161_030 Hb_011161_030 Hb_129459_010--Hb_011161_030 Hb_129459_010--Hb_000189_430 Hb_160233_020 Hb_160233_020 Hb_129459_010--Hb_160233_020 Hb_012107_070 Hb_012107_070 Hb_005517_010--Hb_012107_070 Hb_036693_010 Hb_036693_010 Hb_005517_010--Hb_036693_010 Hb_001916_060 Hb_001916_060 Hb_005517_010--Hb_001916_060 Hb_005155_020 Hb_005155_020 Hb_005517_010--Hb_005155_020 Hb_005517_010--Hb_000997_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.16444 6.61401 8.24305 3.71618 4.50455 2.3507
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis