Hb_055339_010

Information

Type -
Description -
Location Contig55339: 491-1374
Sequence    

Annotation

kegg
ID pop:POPTR_0004s17980g
description POPTRDRAFT_818188; EARLY-RESPONSIVE TO DEHYDRATION 7 family protein
nr
ID XP_002305512.1
description EARLY-RESPONSIVE TO DEHYDRATION 7 family protein [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID B9H186
description EARLY-RESPONSIVE TO DEHYDRATION 7 family protein OS=Populus trichocarpa GN=POPTR_0004s17980g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_055339_010 0.0 - - EARLY-RESPONSIVE TO DEHYDRATION 7 family protein [Populus trichocarpa]
2 Hb_000997_010 0.1793060946 - - PREDICTED: FHA domain-containing protein At4g14490 isoform X2 [Jatropha curcas]
3 Hb_076233_020 0.2047403649 transcription factor TF Family: C2H2 PREDICTED: dnaJ homolog subfamily C member 21 [Populus euphratica]
4 Hb_014361_050 0.2064959522 - - PREDICTED: uncharacterized protein ycf36 isoform X1 [Jatropha curcas]
5 Hb_004570_050 0.2121852211 - - kinase, putative [Ricinus communis]
6 Hb_036693_010 0.2218697719 - - -
7 Hb_007188_060 0.2227532387 - - -
8 Hb_005517_010 0.2357227918 - - Chorismate mutase, chloroplast precursor, putative [Ricinus communis]
9 Hb_006230_040 0.2366200892 - - kinase, putative [Ricinus communis]
10 Hb_170532_010 0.2496931225 - - PREDICTED: COP9 signalosome complex subunit 8 [Jatropha curcas]
11 Hb_057247_010 0.2528328714 - - hypothetical protein JCGZ_04800 [Jatropha curcas]
12 Hb_061466_020 0.2556411027 - - PREDICTED: putative ribonuclease H protein At1g65750-like [Citrus sinensis]
13 Hb_124961_010 0.2592283113 - - hypothetical protein EUGRSUZ_B03893 [Eucalyptus grandis]
14 Hb_164225_010 0.2635575543 - - -
15 Hb_005155_020 0.2639071504 - - -
16 Hb_012107_070 0.2656342649 - - -
17 Hb_010447_020 0.2699313937 - - PREDICTED: uncharacterized protein LOC105797464 [Gossypium raimondii]
18 Hb_002737_020 0.2715220247 - - metallothionein [Bruguiera gymnorhiza]
19 Hb_006816_340 0.2720727688 - - -
20 Hb_182249_010 0.2725498276 - - -

Gene co-expression network

sample Hb_055339_010 Hb_055339_010 Hb_000997_010 Hb_000997_010 Hb_055339_010--Hb_000997_010 Hb_076233_020 Hb_076233_020 Hb_055339_010--Hb_076233_020 Hb_014361_050 Hb_014361_050 Hb_055339_010--Hb_014361_050 Hb_004570_050 Hb_004570_050 Hb_055339_010--Hb_004570_050 Hb_036693_010 Hb_036693_010 Hb_055339_010--Hb_036693_010 Hb_007188_060 Hb_007188_060 Hb_055339_010--Hb_007188_060 Hb_000997_010--Hb_014361_050 Hb_061466_020 Hb_061466_020 Hb_000997_010--Hb_061466_020 Hb_000997_010--Hb_076233_020 Hb_015928_020 Hb_015928_020 Hb_000997_010--Hb_015928_020 Hb_000997_010--Hb_004570_050 Hb_076233_020--Hb_014361_050 Hb_076233_020--Hb_004570_050 Hb_057247_010 Hb_057247_010 Hb_076233_020--Hb_057247_010 Hb_169329_010 Hb_169329_010 Hb_076233_020--Hb_169329_010 Hb_014361_050--Hb_015928_020 Hb_014361_050--Hb_061466_020 Hb_006286_010 Hb_006286_010 Hb_014361_050--Hb_006286_010 Hb_170532_010 Hb_170532_010 Hb_004570_050--Hb_170532_010 Hb_124961_010 Hb_124961_010 Hb_004570_050--Hb_124961_010 Hb_006816_340 Hb_006816_340 Hb_004570_050--Hb_006816_340 Hb_182249_010 Hb_182249_010 Hb_004570_050--Hb_182249_010 Hb_000179_180 Hb_000179_180 Hb_004570_050--Hb_000179_180 Hb_005155_020 Hb_005155_020 Hb_004570_050--Hb_005155_020 Hb_036693_010--Hb_005155_020 Hb_005517_010 Hb_005517_010 Hb_036693_010--Hb_005517_010 Hb_000169_190 Hb_000169_190 Hb_036693_010--Hb_000169_190 Hb_012107_070 Hb_012107_070 Hb_036693_010--Hb_012107_070 Hb_000099_090 Hb_000099_090 Hb_036693_010--Hb_000099_090 Hb_012184_050 Hb_012184_050 Hb_036693_010--Hb_012184_050 Hb_000540_220 Hb_000540_220 Hb_007188_060--Hb_000540_220 Hb_163508_010 Hb_163508_010 Hb_007188_060--Hb_163508_010 Hb_008203_020 Hb_008203_020 Hb_007188_060--Hb_008203_020 Hb_000164_090 Hb_000164_090 Hb_007188_060--Hb_000164_090 Hb_074184_010 Hb_074184_010 Hb_007188_060--Hb_074184_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
65.0208 80.6596 109.403 23.5259 17.2607 97.5816
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.188405 0 0 0 0.262639

CAGE analysis