Hb_000164_090

Information

Type -
Description -
Location Contig164: 79736-80749
Sequence    

Annotation

kegg
ID pbe:PB000605.01.0
description hypothetical protein
nr
ID XP_676799.1
description hypothetical protein [Plasmodium berghei strain ANKA], partial [Plasmodium berghei ANKA]
swissprot
ID -
description -
trembl
ID Q4Z0L1
description Putative uncharacterized protein (Fragment) OS=Plasmodium berghei (strain Anka) GN=PB000605.01.0 PE=4 SV=1
Gene Ontology
ID GO:0000786
description probable histone

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_15059: 76228-89320
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000164_090 0.0 - - hypothetical protein [Plasmodium berghei strain ANKA], partial [Plasmodium berghei ANKA]
2 Hb_000540_220 0.1904914359 - - hypothetical protein JCGZ_05605 [Jatropha curcas]
3 Hb_007188_060 0.2133218123 - - -
4 Hb_163508_010 0.2268389037 - - PREDICTED: mitogen-activated protein kinase kinase kinase 1 [Jatropha curcas]
5 Hb_002897_020 0.2408888576 - - phosphate transporter [Manihot esculenta]
6 Hb_004204_180 0.2493709064 - - -
7 Hb_004800_210 0.2511582554 - - hypothetical protein POPTR_0007s12780g [Populus trichocarpa]
8 Hb_011942_030 0.2549679297 - - -
9 Hb_049884_010 0.2606279987 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
10 Hb_000172_490 0.2870331192 - - PREDICTED: probable E3 ubiquitin-protein ligase RHA2B [Jatropha curcas]
11 Hb_176121_010 0.2929929465 - - -
12 Hb_000221_230 0.3026844946 transcription factor TF Family: Jumonji PREDICTED: F-box protein At1g78280 [Jatropha curcas]
13 Hb_115513_030 0.3031797622 - - PREDICTED: uncharacterized protein At2g34160 [Jatropha curcas]
14 Hb_027402_040 0.3032995555 - - Thioredoxin II, putative [Ricinus communis]
15 Hb_104641_010 0.3038893977 - - PREDICTED: TMV resistance protein N-like isoform X1 [Jatropha curcas]
16 Hb_004524_060 0.3045160621 - - hypothetical protein VITISV_039334 [Vitis vinifera]
17 Hb_001277_200 0.3080044927 - - cation-transporting atpase plant, putative [Ricinus communis]
18 Hb_004117_250 0.3080726792 - - PREDICTED: expansin-A8-like [Populus euphratica]
19 Hb_015481_010 0.31047248 transcription factor TF Family: PLATZ unknown [Medicago truncatula]
20 Hb_002157_250 0.3117466125 - - Pectinesterase-4 precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_000164_090 Hb_000164_090 Hb_000540_220 Hb_000540_220 Hb_000164_090--Hb_000540_220 Hb_007188_060 Hb_007188_060 Hb_000164_090--Hb_007188_060 Hb_163508_010 Hb_163508_010 Hb_000164_090--Hb_163508_010 Hb_002897_020 Hb_002897_020 Hb_000164_090--Hb_002897_020 Hb_004204_180 Hb_004204_180 Hb_000164_090--Hb_004204_180 Hb_004800_210 Hb_004800_210 Hb_000164_090--Hb_004800_210 Hb_000540_220--Hb_163508_010 Hb_002965_070 Hb_002965_070 Hb_000540_220--Hb_002965_070 Hb_000540_220--Hb_007188_060 Hb_000221_230 Hb_000221_230 Hb_000540_220--Hb_000221_230 Hb_000563_510 Hb_000563_510 Hb_000540_220--Hb_000563_510 Hb_007188_060--Hb_163508_010 Hb_008203_020 Hb_008203_020 Hb_007188_060--Hb_008203_020 Hb_055339_010 Hb_055339_010 Hb_007188_060--Hb_055339_010 Hb_074184_010 Hb_074184_010 Hb_007188_060--Hb_074184_010 Hb_027402_040 Hb_027402_040 Hb_163508_010--Hb_027402_040 Hb_003119_050 Hb_003119_050 Hb_163508_010--Hb_003119_050 Hb_163508_010--Hb_074184_010 Hb_000099_090 Hb_000099_090 Hb_163508_010--Hb_000099_090 Hb_115513_030 Hb_115513_030 Hb_002897_020--Hb_115513_030 Hb_011942_030 Hb_011942_030 Hb_002897_020--Hb_011942_030 Hb_000836_180 Hb_000836_180 Hb_002897_020--Hb_000836_180 Hb_000433_050 Hb_000433_050 Hb_002897_020--Hb_000433_050 Hb_104641_010 Hb_104641_010 Hb_002897_020--Hb_104641_010 Hb_179363_010 Hb_179363_010 Hb_002897_020--Hb_179363_010 Hb_012019_040 Hb_012019_040 Hb_004204_180--Hb_012019_040 Hb_004204_180--Hb_000540_220 Hb_076223_020 Hb_076223_020 Hb_004204_180--Hb_076223_020 Hb_004204_180--Hb_104641_010 Hb_004204_180--Hb_011942_030 Hb_004800_210--Hb_011942_030 Hb_049884_010 Hb_049884_010 Hb_004800_210--Hb_049884_010 Hb_004800_210--Hb_002897_020 Hb_004800_210--Hb_000540_220 Hb_012052_030 Hb_012052_030 Hb_004800_210--Hb_012052_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.62618 4.08091 4.33915 0 0.380835 0.669366
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.158655 0.249243 0 0 0

CAGE analysis