Hb_012019_040

Information

Type -
Description -
Location Contig12019: 24888-25538
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012019_040 0.0 - - -
2 Hb_076223_020 0.2219073739 - - -
3 Hb_004204_180 0.2652304914 - - -
4 Hb_002539_030 0.2866387761 - - PREDICTED: uncharacterized protein LOC105630961 [Jatropha curcas]
5 Hb_008725_160 0.3201089518 - - conserved hypothetical protein [Ricinus communis]
6 Hb_004117_250 0.3430088074 - - PREDICTED: expansin-A8-like [Populus euphratica]
7 Hb_001277_200 0.3450664848 - - cation-transporting atpase plant, putative [Ricinus communis]
8 Hb_005686_070 0.3457033784 - - hypothetical protein RCOM_1078540 [Ricinus communis]
9 Hb_004524_060 0.35095609 - - hypothetical protein VITISV_039334 [Vitis vinifera]
10 Hb_004310_010 0.354250978 transcription factor TF Family: ERF Ethylene-responsive transcription factor, putative [Ricinus communis]
11 Hb_002631_090 0.3625442789 - - -
12 Hb_000164_090 0.3649131786 - - hypothetical protein [Plasmodium berghei strain ANKA], partial [Plasmodium berghei ANKA]
13 Hb_000032_190 0.3662612393 - - -
14 Hb_015175_010 0.368953562 - - hypothetical protein JCGZ_17977 [Jatropha curcas]
15 Hb_011942_030 0.3712966993 - - -
16 Hb_002897_020 0.3724496759 - - phosphate transporter [Manihot esculenta]
17 Hb_031004_010 0.3735557866 - - PREDICTED: uncharacterized protein LOC105635099 [Jatropha curcas]
18 Hb_109515_010 0.3756056031 - - -
19 Hb_001205_010 0.3808154157 - - -
20 Hb_000313_020 0.3844199947 - - Endoplasmic reticulum vesicle transporter protein isoform 2, partial [Theobroma cacao]

Gene co-expression network

sample Hb_012019_040 Hb_012019_040 Hb_076223_020 Hb_076223_020 Hb_012019_040--Hb_076223_020 Hb_004204_180 Hb_004204_180 Hb_012019_040--Hb_004204_180 Hb_002539_030 Hb_002539_030 Hb_012019_040--Hb_002539_030 Hb_008725_160 Hb_008725_160 Hb_012019_040--Hb_008725_160 Hb_004117_250 Hb_004117_250 Hb_012019_040--Hb_004117_250 Hb_001277_200 Hb_001277_200 Hb_012019_040--Hb_001277_200 Hb_076223_020--Hb_002539_030 Hb_076223_020--Hb_004204_180 Hb_002539_060 Hb_002539_060 Hb_076223_020--Hb_002539_060 Hb_003687_260 Hb_003687_260 Hb_076223_020--Hb_003687_260 Hb_049719_010 Hb_049719_010 Hb_076223_020--Hb_049719_010 Hb_000164_090 Hb_000164_090 Hb_004204_180--Hb_000164_090 Hb_000540_220 Hb_000540_220 Hb_004204_180--Hb_000540_220 Hb_104641_010 Hb_104641_010 Hb_004204_180--Hb_104641_010 Hb_011942_030 Hb_011942_030 Hb_004204_180--Hb_011942_030 Hb_000032_190 Hb_000032_190 Hb_002539_030--Hb_000032_190 Hb_001878_020 Hb_001878_020 Hb_002539_030--Hb_001878_020 Hb_002982_030 Hb_002982_030 Hb_002539_030--Hb_002982_030 Hb_002539_030--Hb_008725_160 Hb_001205_010 Hb_001205_010 Hb_008725_160--Hb_001205_010 Hb_000313_020 Hb_000313_020 Hb_008725_160--Hb_000313_020 Hb_005686_070 Hb_005686_070 Hb_008725_160--Hb_005686_070 Hb_008725_160--Hb_076223_020 Hb_004524_060 Hb_004524_060 Hb_004117_250--Hb_004524_060 Hb_000589_370 Hb_000589_370 Hb_004117_250--Hb_000589_370 Hb_003292_060 Hb_003292_060 Hb_004117_250--Hb_003292_060 Hb_002897_020 Hb_002897_020 Hb_004117_250--Hb_002897_020 Hb_000787_010 Hb_000787_010 Hb_004117_250--Hb_000787_010 Hb_049884_010 Hb_049884_010 Hb_004117_250--Hb_049884_010 Hb_015175_010 Hb_015175_010 Hb_001277_200--Hb_015175_010 Hb_001268_060 Hb_001268_060 Hb_001277_200--Hb_001268_060 Hb_000086_610 Hb_000086_610 Hb_001277_200--Hb_000086_610 Hb_001277_200--Hb_002982_030 Hb_002119_030 Hb_002119_030 Hb_001277_200--Hb_002119_030 Hb_171974_010 Hb_171974_010 Hb_001277_200--Hb_171974_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0491895 0.226952 0.192992 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.114611 0 0 0 0

CAGE analysis