Hb_008725_160

Information

Type -
Description -
Location Contig8725: 102351-102587
Sequence    

Annotation

kegg
ID rcu:RCOM_1348020
description hypothetical protein
nr
ID XP_002515319.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RNI0
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1348020 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008725_160 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_001205_010 0.0822886441 - - -
3 Hb_000313_020 0.0886234235 - - Endoplasmic reticulum vesicle transporter protein isoform 2, partial [Theobroma cacao]
4 Hb_005686_070 0.2610712246 - - hypothetical protein RCOM_1078540 [Ricinus communis]
5 Hb_002539_030 0.2996970333 - - PREDICTED: uncharacterized protein LOC105630961 [Jatropha curcas]
6 Hb_012019_040 0.3201089518 - - -
7 Hb_076223_020 0.3216660918 - - -
8 Hb_000092_160 0.3253785398 - - PREDICTED: 18 kDa seed maturation protein [Populus euphratica]
9 Hb_156850_010 0.3730237661 - - PREDICTED: uncharacterized protein LOC105635403 [Jatropha curcas]
10 Hb_004324_170 0.3752624884 - - -
11 Hb_007545_040 0.3760552799 - - PREDICTED: uncharacterized protein LOC104884077 [Beta vulgaris subsp. vulgaris]
12 Hb_162189_010 0.3768048624 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Jatropha curcas]
13 Hb_062827_010 0.3791669509 - - -
14 Hb_011692_030 0.3799105927 - - PREDICTED: uncharacterized protein LOC105775392, partial [Gossypium raimondii]
15 Hb_020763_020 0.3799838445 - - hypothetical protein POPTR_0001s27010g [Populus trichocarpa]
16 Hb_132840_040 0.3807783893 - - 1-aminocyclopropane-1-carboxylate oxidase, putative [Ricinus communis]
17 Hb_000093_070 0.3826633739 transcription factor TF Family: C2C2-YABBY Protein CRABS CLAW, putative [Ricinus communis]
18 Hb_087999_010 0.3828112375 - - PREDICTED: uncharacterized protein LOC105640118 [Jatropha curcas]
19 Hb_003041_040 0.3839822084 - - PREDICTED: uncharacterized protein LOC104908276 [Beta vulgaris subsp. vulgaris]
20 Hb_000032_190 0.3854122174 - - -

Gene co-expression network

sample Hb_008725_160 Hb_008725_160 Hb_001205_010 Hb_001205_010 Hb_008725_160--Hb_001205_010 Hb_000313_020 Hb_000313_020 Hb_008725_160--Hb_000313_020 Hb_005686_070 Hb_005686_070 Hb_008725_160--Hb_005686_070 Hb_002539_030 Hb_002539_030 Hb_008725_160--Hb_002539_030 Hb_012019_040 Hb_012019_040 Hb_008725_160--Hb_012019_040 Hb_076223_020 Hb_076223_020 Hb_008725_160--Hb_076223_020 Hb_001205_010--Hb_000313_020 Hb_001205_010--Hb_005686_070 Hb_000092_160 Hb_000092_160 Hb_001205_010--Hb_000092_160 Hb_003041_040 Hb_003041_040 Hb_001205_010--Hb_003041_040 Hb_020763_020 Hb_020763_020 Hb_001205_010--Hb_020763_020 Hb_000313_020--Hb_000092_160 Hb_000313_020--Hb_005686_070 Hb_000313_020--Hb_003041_040 Hb_000313_020--Hb_020763_020 Hb_004310_010 Hb_004310_010 Hb_005686_070--Hb_004310_010 Hb_159500_010 Hb_159500_010 Hb_005686_070--Hb_159500_010 Hb_005686_070--Hb_002539_030 Hb_000032_190 Hb_000032_190 Hb_002539_030--Hb_000032_190 Hb_002539_030--Hb_076223_020 Hb_002539_030--Hb_012019_040 Hb_001878_020 Hb_001878_020 Hb_002539_030--Hb_001878_020 Hb_002982_030 Hb_002982_030 Hb_002539_030--Hb_002982_030 Hb_012019_040--Hb_076223_020 Hb_004204_180 Hb_004204_180 Hb_012019_040--Hb_004204_180 Hb_004117_250 Hb_004117_250 Hb_012019_040--Hb_004117_250 Hb_001277_200 Hb_001277_200 Hb_012019_040--Hb_001277_200 Hb_076223_020--Hb_004204_180 Hb_002539_060 Hb_002539_060 Hb_076223_020--Hb_002539_060 Hb_003687_260 Hb_003687_260 Hb_076223_020--Hb_003687_260 Hb_049719_010 Hb_049719_010 Hb_076223_020--Hb_049719_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.384685 0.395645 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.746854 0 0 0 0

CAGE analysis