Hb_004310_010

Information

Type transcription factor
Description TF Family: ERF
Location Contig4310: 9500-10180
Sequence    

Annotation

kegg
ID rcu:RCOM_1608400
description Ethylene-responsive transcription factor, putative
nr
ID XP_002511588.1
description Ethylene-responsive transcription factor, putative [Ricinus communis]
swissprot
ID Q8L9K1
description Ethylene-responsive transcription factor 13 OS=Arabidopsis thaliana GN=ERF13 PE=2 SV=2
trembl
ID B9RCZ9
description Ethylene-responsive transcription factor, putative OS=Ricinus communis GN=RCOM_1608400 PE=4 SV=1
Gene Ontology
ID GO:0003677
description ethylene-responsive transcription factor 2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004310_010 0.0 transcription factor TF Family: ERF Ethylene-responsive transcription factor, putative [Ricinus communis]
2 Hb_031004_010 0.2744817592 - - PREDICTED: uncharacterized protein LOC105635099 [Jatropha curcas]
3 Hb_076223_020 0.2843565525 - - -
4 Hb_000155_100 0.2883245485 - - Protein MLO, putative [Ricinus communis]
5 Hb_005686_070 0.2898431304 - - hypothetical protein RCOM_1078540 [Ricinus communis]
6 Hb_000523_060 0.3050940819 - - -
7 Hb_005545_090 0.3127740801 - - -
8 Hb_168039_020 0.314731242 - - -
9 Hb_000878_150 0.3154745314 - - Gibberellin receptor GID1, putative [Ricinus communis]
10 Hb_000510_350 0.3180195335 - - Putative polyprotein [Oryza sativa Japonica Group]
11 Hb_002787_100 0.3188949677 - - PREDICTED: uncharacterized protein LOC105637209 [Jatropha curcas]
12 Hb_001021_110 0.3202582349 - - PREDICTED: potassium transporter 5-like [Jatropha curcas]
13 Hb_002481_070 0.3231643018 - - hypothetical protein JCGZ_18787 [Jatropha curcas]
14 Hb_002215_010 0.3235546626 - - receptor protein kinase, putative [Ricinus communis]
15 Hb_175087_010 0.3263799785 - - hypothetical protein POPTR_0011s16980g, partial [Populus trichocarpa]
16 Hb_005588_020 0.3271913779 - - PREDICTED: patatin-like protein 2 [Vitis vinifera]
17 Hb_000291_020 0.3286720684 - - hypothetical protein POPTR_0019s06080g [Populus trichocarpa]
18 Hb_124207_010 0.3290647699 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
19 Hb_025030_010 0.3299025666 - - -
20 Hb_051450_010 0.3309318847 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_004310_010 Hb_004310_010 Hb_031004_010 Hb_031004_010 Hb_004310_010--Hb_031004_010 Hb_076223_020 Hb_076223_020 Hb_004310_010--Hb_076223_020 Hb_000155_100 Hb_000155_100 Hb_004310_010--Hb_000155_100 Hb_005686_070 Hb_005686_070 Hb_004310_010--Hb_005686_070 Hb_000523_060 Hb_000523_060 Hb_004310_010--Hb_000523_060 Hb_005545_090 Hb_005545_090 Hb_004310_010--Hb_005545_090 Hb_009683_050 Hb_009683_050 Hb_031004_010--Hb_009683_050 Hb_002215_010 Hb_002215_010 Hb_031004_010--Hb_002215_010 Hb_000272_120 Hb_000272_120 Hb_031004_010--Hb_000272_120 Hb_001341_110 Hb_001341_110 Hb_031004_010--Hb_001341_110 Hb_000656_180 Hb_000656_180 Hb_031004_010--Hb_000656_180 Hb_012019_040 Hb_012019_040 Hb_076223_020--Hb_012019_040 Hb_002539_030 Hb_002539_030 Hb_076223_020--Hb_002539_030 Hb_004204_180 Hb_004204_180 Hb_076223_020--Hb_004204_180 Hb_002539_060 Hb_002539_060 Hb_076223_020--Hb_002539_060 Hb_003687_260 Hb_003687_260 Hb_076223_020--Hb_003687_260 Hb_049719_010 Hb_049719_010 Hb_076223_020--Hb_049719_010 Hb_000645_100 Hb_000645_100 Hb_000155_100--Hb_000645_100 Hb_006124_040 Hb_006124_040 Hb_000155_100--Hb_006124_040 Hb_005000_230 Hb_005000_230 Hb_000155_100--Hb_005000_230 Hb_179860_010 Hb_179860_010 Hb_000155_100--Hb_179860_010 Hb_030312_060 Hb_030312_060 Hb_000155_100--Hb_030312_060 Hb_006452_140 Hb_006452_140 Hb_000155_100--Hb_006452_140 Hb_008725_160 Hb_008725_160 Hb_005686_070--Hb_008725_160 Hb_001205_010 Hb_001205_010 Hb_005686_070--Hb_001205_010 Hb_159500_010 Hb_159500_010 Hb_005686_070--Hb_159500_010 Hb_000313_020 Hb_000313_020 Hb_005686_070--Hb_000313_020 Hb_005686_070--Hb_002539_030 Hb_002787_100 Hb_002787_100 Hb_000523_060--Hb_002787_100 Hb_002481_070 Hb_002481_070 Hb_000523_060--Hb_002481_070 Hb_000291_020 Hb_000291_020 Hb_000523_060--Hb_000291_020 Hb_124207_010 Hb_124207_010 Hb_000523_060--Hb_124207_010 Hb_000878_150 Hb_000878_150 Hb_000523_060--Hb_000878_150 Hb_000523_060--Hb_005545_090 Hb_001300_120 Hb_001300_120 Hb_005545_090--Hb_001300_120 Hb_000856_330 Hb_000856_330 Hb_005545_090--Hb_000856_330 Hb_005545_090--Hb_002481_070 Hb_019952_010 Hb_019952_010 Hb_005545_090--Hb_019952_010 Hb_000507_010 Hb_000507_010 Hb_005545_090--Hb_000507_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.276906 0.0860218 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0840811 0 0 0.0538524 0

CAGE analysis