Hb_000272_120

Information

Type transcription factor
Description TF Family: ARR-B
Location Contig272: 145058-150957
Sequence    

Annotation

kegg
ID rcu:RCOM_0700880
description two-component system sensor histidine kinase/response regulator, putative
nr
ID XP_012071467.1
description PREDICTED: two-component response regulator ARR18 isoform X2 [Jatropha curcas]
swissprot
ID Q9FGT7
description Two-component response regulator ARR18 OS=Arabidopsis thaliana GN=ARR18 PE=2 SV=2
trembl
ID A0A067KUK4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04001 PE=4 SV=1
Gene Ontology
ID GO:0003677
description two-component response regulator arr12

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28473: 145164-147452 , PASA_asmbl_28475: 148079-148968 , PASA_asmbl_28476: 149306-150463
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000272_120 0.0 transcription factor TF Family: ARR-B PREDICTED: two-component response regulator ARR18 isoform X2 [Jatropha curcas]
2 Hb_013818_040 0.1738433644 - - PREDICTED: pleckstrin homology domain-containing family A member 8 [Jatropha curcas]
3 Hb_005539_020 0.1827719038 - - -
4 Hb_005400_040 0.2026522209 - - PREDICTED: uncharacterized protein At4g04775-like [Jatropha curcas]
5 Hb_002631_040 0.2052525363 - - hypothetical protein EUGRSUZ_J03178 [Eucalyptus grandis]
6 Hb_011716_050 0.2084260707 - - serine acetyltransferase [Hevea brasiliensis]
7 Hb_004899_330 0.2107249931 transcription factor TF Family: Tify plastid jasmonates ZIM-domain protein [Hevea brasiliensis]
8 Hb_003125_020 0.2147168093 - - AMP-activated protein kinase, gamma regulatory subunit, putative [Ricinus communis]
9 Hb_000802_190 0.2174585603 - - PREDICTED: peroxisomal (S)-2-hydroxy-acid oxidase [Jatropha curcas]
10 Hb_116349_040 0.2175818906 transcription factor TF Family: Orphans PREDICTED: two-component response regulator ARR5 [Jatropha curcas]
11 Hb_000997_110 0.2181533219 - - PREDICTED: uncharacterized protein LOC105632092 [Jatropha curcas]
12 Hb_003544_070 0.2190576665 - - conserved hypothetical protein [Ricinus communis]
13 Hb_001080_140 0.2210717715 transcription factor TF Family: RWP-RK conserved hypothetical protein [Ricinus communis]
14 Hb_020805_170 0.2223499054 - - PREDICTED: F-box protein CPR30-like [Jatropha curcas]
15 Hb_008667_060 0.2252378 - - Magnesium and cobalt efflux protein corC, putative [Ricinus communis]
16 Hb_000866_090 0.2279806242 - - PREDICTED: U-box domain-containing protein 33-like isoform X3 [Jatropha curcas]
17 Hb_001699_230 0.2289924285 - - PREDICTED: calcium-dependent protein kinase 28 [Jatropha curcas]
18 Hb_004108_170 0.2293189509 - - conserved hypothetical protein [Ricinus communis]
19 Hb_002301_380 0.2321720796 - - PREDICTED: VQ motif-containing protein 4 [Jatropha curcas]
20 Hb_000526_030 0.232486065 - - PREDICTED: sister chromatid cohesion 1 protein 3-like [Jatropha curcas]

Gene co-expression network

sample Hb_000272_120 Hb_000272_120 Hb_013818_040 Hb_013818_040 Hb_000272_120--Hb_013818_040 Hb_005539_020 Hb_005539_020 Hb_000272_120--Hb_005539_020 Hb_005400_040 Hb_005400_040 Hb_000272_120--Hb_005400_040 Hb_002631_040 Hb_002631_040 Hb_000272_120--Hb_002631_040 Hb_011716_050 Hb_011716_050 Hb_000272_120--Hb_011716_050 Hb_004899_330 Hb_004899_330 Hb_000272_120--Hb_004899_330 Hb_042175_010 Hb_042175_010 Hb_013818_040--Hb_042175_010 Hb_003623_070 Hb_003623_070 Hb_013818_040--Hb_003623_070 Hb_005348_070 Hb_005348_070 Hb_013818_040--Hb_005348_070 Hb_044724_010 Hb_044724_010 Hb_013818_040--Hb_044724_010 Hb_003544_070 Hb_003544_070 Hb_013818_040--Hb_003544_070 Hb_000526_030 Hb_000526_030 Hb_005539_020--Hb_000526_030 Hb_052764_030 Hb_052764_030 Hb_005539_020--Hb_052764_030 Hb_000023_350 Hb_000023_350 Hb_005539_020--Hb_000023_350 Hb_000802_190 Hb_000802_190 Hb_005539_020--Hb_000802_190 Hb_005539_020--Hb_002631_040 Hb_004319_070 Hb_004319_070 Hb_005539_020--Hb_004319_070 Hb_000997_110 Hb_000997_110 Hb_005400_040--Hb_000997_110 Hb_001863_150 Hb_001863_150 Hb_005400_040--Hb_001863_150 Hb_005288_020 Hb_005288_020 Hb_005400_040--Hb_005288_020 Hb_005400_040--Hb_005539_020 Hb_005147_040 Hb_005147_040 Hb_005400_040--Hb_005147_040 Hb_000976_290 Hb_000976_290 Hb_005400_040--Hb_000976_290 Hb_001080_140 Hb_001080_140 Hb_002631_040--Hb_001080_140 Hb_000866_090 Hb_000866_090 Hb_002631_040--Hb_000866_090 Hb_002301_170 Hb_002301_170 Hb_002631_040--Hb_002301_170 Hb_001396_010 Hb_001396_010 Hb_002631_040--Hb_001396_010 Hb_007765_030 Hb_007765_030 Hb_002631_040--Hb_007765_030 Hb_001104_110 Hb_001104_110 Hb_002631_040--Hb_001104_110 Hb_000107_440 Hb_000107_440 Hb_011716_050--Hb_000107_440 Hb_029622_020 Hb_029622_020 Hb_011716_050--Hb_029622_020 Hb_006846_020 Hb_006846_020 Hb_011716_050--Hb_006846_020 Hb_000038_040 Hb_000038_040 Hb_011716_050--Hb_000038_040 Hb_006935_010 Hb_006935_010 Hb_011716_050--Hb_006935_010 Hb_001959_120 Hb_001959_120 Hb_011716_050--Hb_001959_120 Hb_000062_590 Hb_000062_590 Hb_004899_330--Hb_000062_590 Hb_001638_030 Hb_001638_030 Hb_004899_330--Hb_001638_030 Hb_174829_020 Hb_174829_020 Hb_004899_330--Hb_174829_020 Hb_001484_020 Hb_001484_020 Hb_004899_330--Hb_001484_020 Hb_002685_200 Hb_002685_200 Hb_004899_330--Hb_002685_200 Hb_001235_170 Hb_001235_170 Hb_004899_330--Hb_001235_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.579624 4.70579 1.38389 0.841944 0.220274 0.383374
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.47139 0.338764 0.383418 2.3601 0.400863

CAGE analysis