Hb_005348_070

Information

Type -
Description -
Location Contig5348: 64695-65850
Sequence    

Annotation

kegg
ID rcu:RCOM_0710760
description hypothetical protein
nr
ID XP_002516241.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RR72
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0710760 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47509: 64740-66164
cDNA
(Sanger)
(ID:Location)		 009_H16.ab1: 64754-65712 , 018_H09.ab1: 64754-65736 , 019_L05.ab1: 64754-65672 , 020_H01.ab1: 64754-65689 , 025_J04.ab1: 64794-65738 , 026_M23.ab1: 64748-65652 , 027_D17.ab1: 64749-65697 , 035_C22.ab1: 64746-65696 , 036_E01.ab1: 64748-65702 , 041_J01.ab1: 64753-65697 , 043_O19.ab1: 64748-65671 , 048_B17.ab1: 64753-65692 , 049_B05.ab1: 64753-65603 , 050_P08.ab1: 64798-65737

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005348_070 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_007520_020 0.150127242 rubber biosynthesis Gene Name: 1-deoxy-D-xylulose 5-phosphate reductoisomerase 1-deoxy-D-xylulose-5-phosphate reductoisomerase [Hevea brasiliensis]
3 Hb_003544_070 0.1805871263 - - conserved hypothetical protein [Ricinus communis]
4 Hb_002016_060 0.1853032984 - - PREDICTED: uncharacterized protein LOC105642502 [Jatropha curcas]
5 Hb_001799_190 0.1916066723 - - PREDICTED: uncharacterized protein LOC105643221 [Jatropha curcas]
6 Hb_000036_050 0.1935825087 - - PREDICTED: protein STRUBBELIG-RECEPTOR FAMILY 6-like [Camelina sativa]
7 Hb_000215_100 0.1949729695 - - conserved hypothetical protein [Ricinus communis]
8 Hb_013818_040 0.1953675271 - - PREDICTED: pleckstrin homology domain-containing family A member 8 [Jatropha curcas]
9 Hb_060237_020 0.2001755186 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000390_100 0.2043687221 - - alpha-hydroxynitrile lyase family protein [Populus trichocarpa]
11 Hb_002173_020 0.205781402 - - PREDICTED: uncharacterized protein LOC105801078 [Gossypium raimondii]
12 Hb_003927_010 0.2061755128 - - Zinc-binding dehydrogenase family protein isoform 1 [Theobroma cacao]
13 Hb_004136_040 0.2064399616 - - putative protein kinase [Arabidopsis thaliana]
14 Hb_162150_010 0.2064988911 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000003_340 0.2074930957 - - PREDICTED: protein EARLY RESPONSIVE TO DEHYDRATION 15-like isoform X3 [Jatropha curcas]
16 Hb_003398_070 0.2083844023 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 9 [Jatropha curcas]
17 Hb_004310_040 0.2112056522 - - conserved hypothetical protein [Ricinus communis]
18 Hb_112023_010 0.2117674582 - - hypothetical protein EUGRSUZ_C03826 [Eucalyptus grandis]
19 Hb_004994_090 0.2128896375 - - PREDICTED: uncharacterized protein LOC105643033 isoform X2 [Jatropha curcas]
20 Hb_065500_030 0.214116827 - - PREDICTED: probable E3 ubiquitin-protein ligase ARI7 [Jatropha curcas]

Gene co-expression network

sample Hb_005348_070 Hb_005348_070 Hb_007520_020 Hb_007520_020 Hb_005348_070--Hb_007520_020 Hb_003544_070 Hb_003544_070 Hb_005348_070--Hb_003544_070 Hb_002016_060 Hb_002016_060 Hb_005348_070--Hb_002016_060 Hb_001799_190 Hb_001799_190 Hb_005348_070--Hb_001799_190 Hb_000036_050 Hb_000036_050 Hb_005348_070--Hb_000036_050 Hb_000215_100 Hb_000215_100 Hb_005348_070--Hb_000215_100 Hb_007520_020--Hb_000036_050 Hb_003849_240 Hb_003849_240 Hb_007520_020--Hb_003849_240 Hb_007520_020--Hb_001799_190 Hb_000009_120 Hb_000009_120 Hb_007520_020--Hb_000009_120 Hb_000640_130 Hb_000640_130 Hb_007520_020--Hb_000640_130 Hb_003927_010 Hb_003927_010 Hb_007520_020--Hb_003927_010 Hb_001699_150 Hb_001699_150 Hb_003544_070--Hb_001699_150 Hb_000676_040 Hb_000676_040 Hb_003544_070--Hb_000676_040 Hb_001675_010 Hb_001675_010 Hb_003544_070--Hb_001675_010 Hb_002524_020 Hb_002524_020 Hb_003544_070--Hb_002524_020 Hb_003544_070--Hb_001799_190 Hb_008667_060 Hb_008667_060 Hb_003544_070--Hb_008667_060 Hb_015183_100 Hb_015183_100 Hb_002016_060--Hb_015183_100 Hb_004310_040 Hb_004310_040 Hb_002016_060--Hb_004310_040 Hb_000917_100 Hb_000917_100 Hb_002016_060--Hb_000917_100 Hb_002005_120 Hb_002005_120 Hb_002016_060--Hb_002005_120 Hb_000866_080 Hb_000866_080 Hb_002016_060--Hb_000866_080 Hb_000059_020 Hb_000059_020 Hb_002016_060--Hb_000059_020 Hb_001799_190--Hb_001699_150 Hb_001414_040 Hb_001414_040 Hb_001799_190--Hb_001414_040 Hb_001799_190--Hb_001675_010 Hb_000395_220 Hb_000395_220 Hb_001799_190--Hb_000395_220 Hb_001322_180 Hb_001322_180 Hb_001799_190--Hb_001322_180 Hb_001799_190--Hb_002524_020 Hb_000283_150 Hb_000283_150 Hb_000036_050--Hb_000283_150 Hb_001514_130 Hb_001514_130 Hb_000036_050--Hb_001514_130 Hb_004136_040 Hb_004136_040 Hb_000036_050--Hb_004136_040 Hb_002827_020 Hb_002827_020 Hb_000036_050--Hb_002827_020 Hb_000036_050--Hb_000640_130 Hb_000215_100--Hb_000640_130 Hb_001055_030 Hb_001055_030 Hb_000215_100--Hb_001055_030 Hb_000976_040 Hb_000976_040 Hb_000215_100--Hb_000976_040 Hb_000009_330 Hb_000009_330 Hb_000215_100--Hb_000009_330 Hb_001318_020 Hb_001318_020 Hb_000215_100--Hb_001318_020 Hb_008160_030 Hb_008160_030 Hb_000215_100--Hb_008160_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
985.296 1295.92 322.541 425.822 268.515 353.969
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
721.895 59.4718 57.4478 1100.99 412.745

CAGE analysis