Hb_003927_010

Information

Type -
Description -
Location Contig3927: 1566-10857
Sequence    

Annotation

kegg
ID tcc:TCM_019784
description Zinc-binding dehydrogenase family protein isoform 1
nr
ID XP_007033621.1
description Zinc-binding dehydrogenase family protein isoform 1 [Theobroma cacao]
swissprot
ID Q39173
description NADP-dependent alkenal double bond reductase P2 OS=Arabidopsis thaliana GN=P2 PE=2 SV=2
trembl
ID A0A061EJG6
description Zinc-binding dehydrogenase family protein isoform 1 OS=Theobroma cacao GN=TCM_019784 PE=4 SV=1
Gene Ontology
ID GO:0008270
description 2-alkenal reductase (nadp(+)-dependent)-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39334: 1674-10853 , PASA_asmbl_39335: 6645-7276
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003927_010 0.0 - - Zinc-binding dehydrogenase family protein isoform 1 [Theobroma cacao]
2 Hb_003498_120 0.0821418779 - - hypothetical protein POPTR_0015s12430g, partial [Populus trichocarpa]
3 Hb_039946_050 0.0907847916 - - catalytic, putative [Ricinus communis]
4 Hb_000099_030 0.0962909066 - - 6-phosphogluconate dehydrogenase, putative [Ricinus communis]
5 Hb_003913_110 0.096807578 - - PREDICTED: uncharacterized protein LOC105640319 [Jatropha curcas]
6 Hb_001105_160 0.1015424358 - - PREDICTED: protein phosphatase 2C 32 [Jatropha curcas]
7 Hb_007083_030 0.1019244625 - - Ubiquitin carboxyl-terminal hydrolase, putative [Ricinus communis]
8 Hb_002909_090 0.1034936788 - - PREDICTED: 4-alpha-glucanotransferase DPE2 [Jatropha curcas]
9 Hb_017358_040 0.103562658 - - PREDICTED: RNA-dependent RNA polymerase 6-like [Jatropha curcas]
10 Hb_000069_410 0.1050435423 - - PREDICTED: protein SDE2 homolog [Jatropha curcas]
11 Hb_000684_290 0.1069688079 - - ubiquitin protein ligase E3a, putative [Ricinus communis]
12 Hb_011287_050 0.1073122895 - - PREDICTED: uncharacterized protein LOC105644786 [Jatropha curcas]
13 Hb_003177_060 0.1089662981 - - PREDICTED: 5'-3' exoribonuclease 3 isoform X1 [Jatropha curcas]
14 Hb_001821_090 0.1089915551 transcription factor TF Family: CAMTA PREDICTED: calmodulin-binding transcription activator 2 [Jatropha curcas]
15 Hb_002815_030 0.1098025702 - - hypothetical protein CISIN_1g0095162mg, partial [Citrus sinensis]
16 Hb_000608_230 0.1101525803 - - PREDICTED: putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial [Jatropha curcas]
17 Hb_000340_490 0.1112166775 - - PREDICTED: ankyrin-1-like [Jatropha curcas]
18 Hb_000206_040 0.111569477 - - PREDICTED: uncharacterized protein LOC105639683 [Jatropha curcas]
19 Hb_011173_030 0.1129284638 - - pumilio, putative [Ricinus communis]
20 Hb_011287_080 0.1130274284 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_003927_010 Hb_003927_010 Hb_003498_120 Hb_003498_120 Hb_003927_010--Hb_003498_120 Hb_039946_050 Hb_039946_050 Hb_003927_010--Hb_039946_050 Hb_000099_030 Hb_000099_030 Hb_003927_010--Hb_000099_030 Hb_003913_110 Hb_003913_110 Hb_003927_010--Hb_003913_110 Hb_001105_160 Hb_001105_160 Hb_003927_010--Hb_001105_160 Hb_007083_030 Hb_007083_030 Hb_003927_010--Hb_007083_030 Hb_003177_060 Hb_003177_060 Hb_003498_120--Hb_003177_060 Hb_001377_160 Hb_001377_160 Hb_003498_120--Hb_001377_160 Hb_000505_020 Hb_000505_020 Hb_003498_120--Hb_000505_020 Hb_001235_140 Hb_001235_140 Hb_003498_120--Hb_001235_140 Hb_001821_090 Hb_001821_090 Hb_003498_120--Hb_001821_090 Hb_005143_030 Hb_005143_030 Hb_003498_120--Hb_005143_030 Hb_005663_110 Hb_005663_110 Hb_039946_050--Hb_005663_110 Hb_041327_010 Hb_041327_010 Hb_039946_050--Hb_041327_010 Hb_179306_020 Hb_179306_020 Hb_039946_050--Hb_179306_020 Hb_039946_050--Hb_000099_030 Hb_000069_120 Hb_000069_120 Hb_039946_050--Hb_000069_120 Hb_000537_050 Hb_000537_050 Hb_039946_050--Hb_000537_050 Hb_001442_060 Hb_001442_060 Hb_000099_030--Hb_001442_060 Hb_000238_030 Hb_000238_030 Hb_000099_030--Hb_000238_030 Hb_102698_010 Hb_102698_010 Hb_000099_030--Hb_102698_010 Hb_000453_250 Hb_000453_250 Hb_000099_030--Hb_000453_250 Hb_000001_170 Hb_000001_170 Hb_000099_030--Hb_000001_170 Hb_001452_220 Hb_001452_220 Hb_003913_110--Hb_001452_220 Hb_000608_230 Hb_000608_230 Hb_003913_110--Hb_000608_230 Hb_011173_030 Hb_011173_030 Hb_003913_110--Hb_011173_030 Hb_000307_210 Hb_000307_210 Hb_003913_110--Hb_000307_210 Hb_000740_100 Hb_000740_100 Hb_003913_110--Hb_000740_100 Hb_028487_010 Hb_028487_010 Hb_003913_110--Hb_028487_010 Hb_011287_050 Hb_011287_050 Hb_001105_160--Hb_011287_050 Hb_001105_160--Hb_041327_010 Hb_005568_040 Hb_005568_040 Hb_001105_160--Hb_005568_040 Hb_012092_060 Hb_012092_060 Hb_001105_160--Hb_012092_060 Hb_071130_010 Hb_071130_010 Hb_001105_160--Hb_071130_010 Hb_010809_010 Hb_010809_010 Hb_001105_160--Hb_010809_010 Hb_011618_090 Hb_011618_090 Hb_007083_030--Hb_011618_090 Hb_007083_030--Hb_001377_160 Hb_000579_230 Hb_000579_230 Hb_007083_030--Hb_000579_230 Hb_003943_010 Hb_003943_010 Hb_007083_030--Hb_003943_010 Hb_002815_030 Hb_002815_030 Hb_007083_030--Hb_002815_030 Hb_001946_340 Hb_001946_340 Hb_007083_030--Hb_001946_340
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
47.5448 70.9727 23.172 47.9348 45.7121 55.6616
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
47.7486 13.6251 26.7623 98.9136 50.0159

CAGE analysis