Hb_013818_040

Information

Type -
Description -
Location Contig13818: 14492-16467
Sequence    

Annotation

kegg
ID pop:POPTR_0002s07190g
description POPTRDRAFT_798641; glycolipid transfer family protein
nr
ID XP_012066066.1
description PREDICTED: pleckstrin homology domain-containing family A member 8 [Jatropha curcas]
swissprot
ID Q6NLQ3
description Glycolipid transfer protein 2 OS=Arabidopsis thaliana GN=GLTP2 PE=2 SV=1
trembl
ID A0A067LFX5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25220 PE=4 SV=1
Gene Ontology
ID GO:0005737
description pleckstrin homology domain-containing family a member 8-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_10510: 14440-15666 , PASA_asmbl_10511: 15217-15562 , PASA_asmbl_10512: 16124-16415
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_013818_040 0.0 - - PREDICTED: pleckstrin homology domain-containing family A member 8 [Jatropha curcas]
2 Hb_042175_010 0.1737889744 - - hypothetical protein CISIN_1g0016721mg, partial [Citrus sinensis]
3 Hb_000272_120 0.1738433644 transcription factor TF Family: ARR-B PREDICTED: two-component response regulator ARR18 isoform X2 [Jatropha curcas]
4 Hb_003623_070 0.1900561806 - - ubiquitin-protein ligase, putative [Ricinus communis]
5 Hb_005348_070 0.1953675271 - - conserved hypothetical protein [Ricinus communis]
6 Hb_044724_010 0.1979410621 - - hypothetical protein JCGZ_01308 [Jatropha curcas]
7 Hb_003544_070 0.2014361277 - - conserved hypothetical protein [Ricinus communis]
8 Hb_005539_020 0.2056176153 - - -
9 Hb_004108_170 0.2096173812 - - conserved hypothetical protein [Ricinus communis]
10 Hb_001635_050 0.2176024583 - - PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, mitochondrial [Nicotiana sylvestris]
11 Hb_003371_120 0.217830085 - - hypothetical protein JCGZ_05278 [Jatropha curcas]
12 Hb_002686_280 0.2180562333 transcription factor TF Family: NAC transcription factor, putative [Ricinus communis]
13 Hb_112023_010 0.2206040776 - - hypothetical protein EUGRSUZ_C03826 [Eucalyptus grandis]
14 Hb_000390_100 0.2207610049 - - alpha-hydroxynitrile lyase family protein [Populus trichocarpa]
15 Hb_000010_350 0.2231484399 - - PREDICTED: programmed cell death protein 4-like [Jatropha curcas]
16 Hb_000003_340 0.224422251 - - PREDICTED: protein EARLY RESPONSIVE TO DEHYDRATION 15-like isoform X3 [Jatropha curcas]
17 Hb_005400_040 0.2245598303 - - PREDICTED: uncharacterized protein At4g04775-like [Jatropha curcas]
18 Hb_002301_380 0.2247245751 - - PREDICTED: VQ motif-containing protein 4 [Jatropha curcas]
19 Hb_001863_150 0.2265899983 - - VQ motif-containing family protein [Populus trichocarpa]
20 Hb_000997_110 0.2296282673 - - PREDICTED: uncharacterized protein LOC105632092 [Jatropha curcas]

Gene co-expression network

sample Hb_013818_040 Hb_013818_040 Hb_042175_010 Hb_042175_010 Hb_013818_040--Hb_042175_010 Hb_000272_120 Hb_000272_120 Hb_013818_040--Hb_000272_120 Hb_003623_070 Hb_003623_070 Hb_013818_040--Hb_003623_070 Hb_005348_070 Hb_005348_070 Hb_013818_040--Hb_005348_070 Hb_044724_010 Hb_044724_010 Hb_013818_040--Hb_044724_010 Hb_003544_070 Hb_003544_070 Hb_013818_040--Hb_003544_070 Hb_003060_090 Hb_003060_090 Hb_042175_010--Hb_003060_090 Hb_001141_360 Hb_001141_360 Hb_042175_010--Hb_001141_360 Hb_002686_280 Hb_002686_280 Hb_042175_010--Hb_002686_280 Hb_001863_150 Hb_001863_150 Hb_042175_010--Hb_001863_150 Hb_001865_060 Hb_001865_060 Hb_042175_010--Hb_001865_060 Hb_000010_350 Hb_000010_350 Hb_042175_010--Hb_000010_350 Hb_005539_020 Hb_005539_020 Hb_000272_120--Hb_005539_020 Hb_005400_040 Hb_005400_040 Hb_000272_120--Hb_005400_040 Hb_002631_040 Hb_002631_040 Hb_000272_120--Hb_002631_040 Hb_011716_050 Hb_011716_050 Hb_000272_120--Hb_011716_050 Hb_004899_330 Hb_004899_330 Hb_000272_120--Hb_004899_330 Hb_000140_410 Hb_000140_410 Hb_003623_070--Hb_000140_410 Hb_001269_690 Hb_001269_690 Hb_003623_070--Hb_001269_690 Hb_004788_040 Hb_004788_040 Hb_003623_070--Hb_004788_040 Hb_001529_050 Hb_001529_050 Hb_003623_070--Hb_001529_050 Hb_001635_050 Hb_001635_050 Hb_003623_070--Hb_001635_050 Hb_002273_050 Hb_002273_050 Hb_003623_070--Hb_002273_050 Hb_007520_020 Hb_007520_020 Hb_005348_070--Hb_007520_020 Hb_005348_070--Hb_003544_070 Hb_002016_060 Hb_002016_060 Hb_005348_070--Hb_002016_060 Hb_001799_190 Hb_001799_190 Hb_005348_070--Hb_001799_190 Hb_000036_050 Hb_000036_050 Hb_005348_070--Hb_000036_050 Hb_000215_100 Hb_000215_100 Hb_005348_070--Hb_000215_100 Hb_002774_090 Hb_002774_090 Hb_044724_010--Hb_002774_090 Hb_007259_040 Hb_007259_040 Hb_044724_010--Hb_007259_040 Hb_005779_040 Hb_005779_040 Hb_044724_010--Hb_005779_040 Hb_004410_150 Hb_004410_150 Hb_044724_010--Hb_004410_150 Hb_003894_100 Hb_003894_100 Hb_044724_010--Hb_003894_100 Hb_003504_040 Hb_003504_040 Hb_044724_010--Hb_003504_040 Hb_001699_150 Hb_001699_150 Hb_003544_070--Hb_001699_150 Hb_000676_040 Hb_000676_040 Hb_003544_070--Hb_000676_040 Hb_001675_010 Hb_001675_010 Hb_003544_070--Hb_001675_010 Hb_002524_020 Hb_002524_020 Hb_003544_070--Hb_002524_020 Hb_003544_070--Hb_001799_190 Hb_008667_060 Hb_008667_060 Hb_003544_070--Hb_008667_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.5134 40.0736 5.88113 2.65511 3.97362 5.72949
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
17.3751 3.80257 0.802249 19.4789 4.53945

CAGE analysis