Hb_004788_040

Information

Type -
Description -
Location Contig4788: 69998-78434
Sequence    

Annotation

kegg
ID rcu:RCOM_1494400
description serine-threonine protein kinase, plant-type, putative (EC:2.7.11.13)
nr
ID XP_002516046.1
description serine-threonine protein kinase, plant-type, putative [Ricinus communis]
swissprot
ID Q9CAL8
description Proline-rich receptor-like protein kinase PERK13 OS=Arabidopsis thaliana GN=PERK13 PE=2 SV=1
trembl
ID B9RQM7
description Serine-threonine protein kinase, plant-type, putative OS=Ricinus communis GN=RCOM_1494400 PE=3 SV=1
Gene Ontology
ID GO:0004672
description serine-threonine protein plant-

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004788_040 0.0 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
2 Hb_003623_070 0.1586041811 - - ubiquitin-protein ligase, putative [Ricinus communis]
3 Hb_001635_050 0.1676833779 - - PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, mitochondrial [Nicotiana sylvestris]
4 Hb_001269_690 0.1874366648 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000140_410 0.1875676495 - - PREDICTED: uncharacterized protein At5g41620 isoform X1 [Jatropha curcas]
6 Hb_001529_050 0.1932324238 - - PREDICTED: ribulose bisphosphate carboxylase small chain clone 512-like [Jatropha curcas]
7 Hb_001104_240 0.1965339761 transcription factor TF Family: Trihelix transcription factor, putative [Ricinus communis]
8 Hb_001507_100 0.1971339469 - - cytochrome P450, putative [Ricinus communis]
9 Hb_002273_060 0.2029417519 - - conserved hypothetical protein [Ricinus communis]
10 Hb_006586_030 0.2070928197 - - PREDICTED: transcription factor LHW isoform X1 [Jatropha curcas]
11 Hb_002273_050 0.2079421959 - - PREDICTED: geranylgeranyl diphosphate reductase, chloroplastic-like [Jatropha curcas]
12 Hb_001117_070 0.2130808503 - - 30S ribosomal protein S19, putative [Ricinus communis]
13 Hb_000036_050 0.2183486549 - - PREDICTED: protein STRUBBELIG-RECEPTOR FAMILY 6-like [Camelina sativa]
14 Hb_004410_150 0.2186103824 transcription factor TF Family: SRS PREDICTED: protein SHI RELATED SEQUENCE 1 [Jatropha curcas]
15 Hb_002043_010 0.2186789015 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
16 Hb_138585_110 0.2246486457 - - -
17 Hb_112023_010 0.2249546626 - - hypothetical protein EUGRSUZ_C03826 [Eucalyptus grandis]
18 Hb_002827_020 0.2282650386 - - PREDICTED: plant intracellular Ras-group-related LRR protein 5-like [Jatropha curcas]
19 Hb_002273_080 0.2285903712 - - geranylgeranyl reductase [Monoraphidium neglectum]
20 Hb_000402_010 0.2324232545 transcription factor TF Family: HB PREDICTED: homeobox protein knotted-1-like 6 [Jatropha curcas]

Gene co-expression network

sample Hb_004788_040 Hb_004788_040 Hb_003623_070 Hb_003623_070 Hb_004788_040--Hb_003623_070 Hb_001635_050 Hb_001635_050 Hb_004788_040--Hb_001635_050 Hb_001269_690 Hb_001269_690 Hb_004788_040--Hb_001269_690 Hb_000140_410 Hb_000140_410 Hb_004788_040--Hb_000140_410 Hb_001529_050 Hb_001529_050 Hb_004788_040--Hb_001529_050 Hb_001104_240 Hb_001104_240 Hb_004788_040--Hb_001104_240 Hb_003623_070--Hb_000140_410 Hb_003623_070--Hb_001269_690 Hb_003623_070--Hb_001529_050 Hb_003623_070--Hb_001635_050 Hb_002273_050 Hb_002273_050 Hb_003623_070--Hb_002273_050 Hb_002273_090 Hb_002273_090 Hb_001635_050--Hb_002273_090 Hb_002273_060 Hb_002273_060 Hb_001635_050--Hb_002273_060 Hb_002273_080 Hb_002273_080 Hb_001635_050--Hb_002273_080 Hb_001635_050--Hb_002273_050 Hb_001269_690--Hb_000140_410 Hb_000200_280 Hb_000200_280 Hb_001269_690--Hb_000200_280 Hb_001269_690--Hb_001529_050 Hb_001269_690--Hb_002273_050 Hb_000227_060 Hb_000227_060 Hb_001269_690--Hb_000227_060 Hb_001269_690--Hb_001104_240 Hb_008066_070 Hb_008066_070 Hb_000140_410--Hb_008066_070 Hb_020805_170 Hb_020805_170 Hb_000140_410--Hb_020805_170 Hb_000905_170 Hb_000905_170 Hb_000140_410--Hb_000905_170 Hb_000140_410--Hb_001529_050 Hb_001529_050--Hb_001104_240 Hb_138585_110 Hb_138585_110 Hb_001529_050--Hb_138585_110 Hb_000086_660 Hb_000086_660 Hb_001529_050--Hb_000086_660 Hb_006586_030 Hb_006586_030 Hb_001104_240--Hb_006586_030 Hb_001104_240--Hb_000086_660 Hb_002827_020 Hb_002827_020 Hb_001104_240--Hb_002827_020 Hb_001104_240--Hb_000200_280
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.268501 0.474263 0.00758468 0.0281363 0.0660973 0.124565
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.176341 0.121407 0.0329082 0.607094 0.0366767

CAGE analysis