Hb_002273_060

Information

Type -
Description -
Location Contig2273: 59992-60315
Sequence    

Annotation

kegg
ID rcu:RCOM_0911530
description hypothetical protein
nr
ID XP_002517097.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RTM8
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0911530 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23709: 60670-60782 , PASA_asmbl_23710: 60799-61300
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002273_060 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_002273_090 0.1769751285 - - -
3 Hb_001635_050 0.1979736573 - - PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, mitochondrial [Nicotiana sylvestris]
4 Hb_004788_040 0.2029417519 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
5 Hb_006586_030 0.2100510277 - - PREDICTED: transcription factor LHW isoform X1 [Jatropha curcas]
6 Hb_009848_030 0.2139116639 - - long-chain-fatty-acid CoA ligase, putative [Ricinus communis]
7 Hb_009848_040 0.2176551038 - - hypothetical protein B456_009G349600 [Gossypium raimondii]
8 Hb_000283_150 0.2250045352 - - Ankyrin repeat family protein [Theobroma cacao]
9 Hb_001269_690 0.2281704377 - - conserved hypothetical protein [Ricinus communis]
10 Hb_112023_010 0.2307269811 - - hypothetical protein EUGRSUZ_C03826 [Eucalyptus grandis]
11 Hb_001104_240 0.2334147974 transcription factor TF Family: Trihelix transcription factor, putative [Ricinus communis]
12 Hb_000976_330 0.233551288 - - hypothetical protein POPTR_0001s05180g [Populus trichocarpa]
13 Hb_002273_050 0.233954824 - - PREDICTED: geranylgeranyl diphosphate reductase, chloroplastic-like [Jatropha curcas]
14 Hb_002827_020 0.2344168648 - - PREDICTED: plant intracellular Ras-group-related LRR protein 5-like [Jatropha curcas]
15 Hb_134894_010 0.2365845922 - - PREDICTED: E3 ubiquitin-protein ligase UPL5-like isoform X2 [Gossypium raimondii]
16 Hb_027445_050 0.2378508114 - - PREDICTED: titin isoform X13 [Jatropha curcas]
17 Hb_002273_080 0.239649856 - - geranylgeranyl reductase [Monoraphidium neglectum]
18 Hb_001507_100 0.2422838792 - - cytochrome P450, putative [Ricinus communis]
19 Hb_001524_090 0.2442632886 - - PREDICTED: uncharacterized protein LOC105113929 [Populus euphratica]
20 Hb_000200_280 0.2484507378 - - PREDICTED: uncharacterized protein LOC105636924 [Jatropha curcas]

Gene co-expression network

sample Hb_002273_060 Hb_002273_060 Hb_002273_090 Hb_002273_090 Hb_002273_060--Hb_002273_090 Hb_001635_050 Hb_001635_050 Hb_002273_060--Hb_001635_050 Hb_004788_040 Hb_004788_040 Hb_002273_060--Hb_004788_040 Hb_006586_030 Hb_006586_030 Hb_002273_060--Hb_006586_030 Hb_009848_030 Hb_009848_030 Hb_002273_060--Hb_009848_030 Hb_009848_040 Hb_009848_040 Hb_002273_060--Hb_009848_040 Hb_002273_090--Hb_001635_050 Hb_002273_090--Hb_009848_040 Hb_002273_090--Hb_009848_030 Hb_002273_050 Hb_002273_050 Hb_002273_090--Hb_002273_050 Hb_002273_080 Hb_002273_080 Hb_002273_090--Hb_002273_080 Hb_003623_070 Hb_003623_070 Hb_001635_050--Hb_003623_070 Hb_001635_050--Hb_004788_040 Hb_001635_050--Hb_002273_080 Hb_001635_050--Hb_002273_050 Hb_004788_040--Hb_003623_070 Hb_001269_690 Hb_001269_690 Hb_004788_040--Hb_001269_690 Hb_000140_410 Hb_000140_410 Hb_004788_040--Hb_000140_410 Hb_001529_050 Hb_001529_050 Hb_004788_040--Hb_001529_050 Hb_001104_240 Hb_001104_240 Hb_004788_040--Hb_001104_240 Hb_006586_030--Hb_001104_240 Hb_002827_020 Hb_002827_020 Hb_006586_030--Hb_002827_020 Hb_001524_090 Hb_001524_090 Hb_006586_030--Hb_001524_090 Hb_000086_660 Hb_000086_660 Hb_006586_030--Hb_000086_660 Hb_006586_030--Hb_001269_690 Hb_000200_280 Hb_000200_280 Hb_006586_030--Hb_000200_280 Hb_000032_310 Hb_000032_310 Hb_009848_030--Hb_000032_310 Hb_001989_020 Hb_001989_020 Hb_009848_030--Hb_001989_020 Hb_001396_260 Hb_001396_260 Hb_009848_030--Hb_001396_260 Hb_000521_170 Hb_000521_170 Hb_009848_030--Hb_000521_170 Hb_003656_120 Hb_003656_120 Hb_009848_030--Hb_003656_120 Hb_009848_030--Hb_009848_040 Hb_012423_010 Hb_012423_010 Hb_009848_040--Hb_012423_010 Hb_084429_010 Hb_084429_010 Hb_009848_040--Hb_084429_010 Hb_004096_080 Hb_004096_080 Hb_009848_040--Hb_004096_080 Hb_002235_140 Hb_002235_140 Hb_009848_040--Hb_002235_140 Hb_006588_150 Hb_006588_150 Hb_009848_040--Hb_006588_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.40336 11.0227 0.541251 0.390957 3.37717 9.4759
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.10687 4.15437 0.360914 17.4867 0.786826

CAGE analysis