Hb_001635_050

Information

Type -
Description -
Location Contig1635: 48226-49327
Sequence    

Annotation

kegg
ID vvi:100262767
description NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, mitochondrial
nr
ID XP_009784145.1
description PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, mitochondrial [Nicotiana sylvestris]
swissprot
ID Q43844
description NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, mitochondrial OS=Solanum tuberosum PE=2 SV=1
trembl
ID W9R181
description NADH dehydrogenase [ubiquinone] iron-sulfur protein 7 OS=Morus notabilis GN=L484_008108 PE=3 SV=1
Gene Ontology
ID GO:0005747
description nadh dehydrogenase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_14933: 48460-49425
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001635_050 0.0 - - PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, mitochondrial [Nicotiana sylvestris]
2 Hb_003623_070 0.161995894 - - ubiquitin-protein ligase, putative [Ricinus communis]
3 Hb_004788_040 0.1676833779 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
4 Hb_002273_090 0.1917243286 - - -
5 Hb_002273_060 0.1979736573 - - conserved hypothetical protein [Ricinus communis]
6 Hb_002273_080 0.2012885765 - - geranylgeranyl reductase [Monoraphidium neglectum]
7 Hb_002273_050 0.2025450157 - - PREDICTED: geranylgeranyl diphosphate reductase, chloroplastic-like [Jatropha curcas]
8 Hb_002686_280 0.2073649669 transcription factor TF Family: NAC transcription factor, putative [Ricinus communis]
9 Hb_007382_050 0.2150044777 - - PREDICTED: uncharacterized protein LOC105645009 [Jatropha curcas]
10 Hb_000140_410 0.2150174038 - - PREDICTED: uncharacterized protein At5g41620 isoform X1 [Jatropha curcas]
11 Hb_044724_010 0.2159967686 - - hypothetical protein JCGZ_01308 [Jatropha curcas]
12 Hb_013818_040 0.2176024583 - - PREDICTED: pleckstrin homology domain-containing family A member 8 [Jatropha curcas]
13 Hb_003371_120 0.2273416938 - - hypothetical protein JCGZ_05278 [Jatropha curcas]
14 Hb_007144_010 0.2277938932 - - -
15 Hb_004410_150 0.2281393039 transcription factor TF Family: SRS PREDICTED: protein SHI RELATED SEQUENCE 1 [Jatropha curcas]
16 Hb_001269_690 0.2296911866 - - conserved hypothetical protein [Ricinus communis]
17 Hb_020805_170 0.2322755248 - - PREDICTED: F-box protein CPR30-like [Jatropha curcas]
18 Hb_112023_010 0.238932341 - - hypothetical protein EUGRSUZ_C03826 [Eucalyptus grandis]
19 Hb_002110_260 0.239567749 - - zinc finger protein, putative [Ricinus communis]
20 Hb_000036_050 0.2432723873 - - PREDICTED: protein STRUBBELIG-RECEPTOR FAMILY 6-like [Camelina sativa]

Gene co-expression network

sample Hb_001635_050 Hb_001635_050 Hb_003623_070 Hb_003623_070 Hb_001635_050--Hb_003623_070 Hb_004788_040 Hb_004788_040 Hb_001635_050--Hb_004788_040 Hb_002273_090 Hb_002273_090 Hb_001635_050--Hb_002273_090 Hb_002273_060 Hb_002273_060 Hb_001635_050--Hb_002273_060 Hb_002273_080 Hb_002273_080 Hb_001635_050--Hb_002273_080 Hb_002273_050 Hb_002273_050 Hb_001635_050--Hb_002273_050 Hb_000140_410 Hb_000140_410 Hb_003623_070--Hb_000140_410 Hb_001269_690 Hb_001269_690 Hb_003623_070--Hb_001269_690 Hb_003623_070--Hb_004788_040 Hb_001529_050 Hb_001529_050 Hb_003623_070--Hb_001529_050 Hb_003623_070--Hb_002273_050 Hb_004788_040--Hb_001269_690 Hb_004788_040--Hb_000140_410 Hb_004788_040--Hb_001529_050 Hb_001104_240 Hb_001104_240 Hb_004788_040--Hb_001104_240 Hb_002273_090--Hb_002273_060 Hb_009848_040 Hb_009848_040 Hb_002273_090--Hb_009848_040 Hb_009848_030 Hb_009848_030 Hb_002273_090--Hb_009848_030 Hb_002273_090--Hb_002273_050 Hb_002273_090--Hb_002273_080 Hb_002273_060--Hb_004788_040 Hb_006586_030 Hb_006586_030 Hb_002273_060--Hb_006586_030 Hb_002273_060--Hb_009848_030 Hb_002273_060--Hb_009848_040 Hb_002273_080--Hb_002273_050 Hb_000215_410 Hb_000215_410 Hb_002273_080--Hb_000215_410 Hb_002686_280 Hb_002686_280 Hb_002273_080--Hb_002686_280 Hb_129204_060 Hb_129204_060 Hb_002273_080--Hb_129204_060 Hb_002273_080--Hb_001269_690 Hb_001269_040 Hb_001269_040 Hb_002273_080--Hb_001269_040 Hb_002273_050--Hb_000215_410 Hb_000836_120 Hb_000836_120 Hb_002273_050--Hb_000836_120 Hb_002273_050--Hb_001269_690 Hb_002273_050--Hb_002686_280 Hb_002273_050--Hb_129204_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
19.9233 91.2896 3.84613 5.23633 9.01339 26.5701
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
24.0774 5.86893 1.08131 93.5394 3.52561

CAGE analysis