Hb_138585_110

Information

Type -
Description -
Location Contig138585: 78673-80280
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_10568: 78756-79316 , PASA_asmbl_10569: 79570-80025
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_138585_110 0.0 - - -
2 Hb_000796_250 0.1356977161 transcription factor TF Family: WRKY WRKY1 [Hevea brasiliensis]
3 Hb_001529_050 0.1588313165 - - PREDICTED: ribulose bisphosphate carboxylase small chain clone 512-like [Jatropha curcas]
4 Hb_004230_040 0.1647114339 - - conserved hypothetical protein [Ricinus communis]
5 Hb_001507_100 0.1704424055 - - cytochrome P450, putative [Ricinus communis]
6 Hb_001104_240 0.1726834866 transcription factor TF Family: Trihelix transcription factor, putative [Ricinus communis]
7 Hb_010334_020 0.1800507201 - - PREDICTED: inactive protein RESTRICTED TEV MOVEMENT 1-like [Sesamum indicum]
8 Hb_001504_120 0.1865441271 - - -
9 Hb_000140_410 0.1880903707 - - PREDICTED: uncharacterized protein At5g41620 isoform X1 [Jatropha curcas]
10 Hb_001433_180 0.1895506685 - - hypothetical protein JCGZ_23261 [Jatropha curcas]
11 Hb_000318_200 0.1901954388 - - PREDICTED: hyoscyamine 6-dioxygenase-like [Jatropha curcas]
12 Hb_001117_070 0.19285834 - - 30S ribosomal protein S19, putative [Ricinus communis]
13 Hb_000640_300 0.1955961769 transcription factor TF Family: WRKY WRKY1 [Hevea brasiliensis]
14 Hb_006586_030 0.1963509643 - - PREDICTED: transcription factor LHW isoform X1 [Jatropha curcas]
15 Hb_004242_190 0.1971070087 - - Leucoanthocyanidin dioxygenase, putative [Ricinus communis]
16 Hb_001269_690 0.1994875843 - - conserved hypothetical protein [Ricinus communis]
17 Hb_003073_180 0.2004991246 - - hypothetical protein JCGZ_20198 [Jatropha curcas]
18 Hb_002028_220 0.2005640682 - - aminoadipic semialdehyde synthase, putative [Ricinus communis]
19 Hb_000805_320 0.2017284088 - - PREDICTED: putative hydrolase C777.06c [Jatropha curcas]
20 Hb_008864_090 0.203997857 - - PREDICTED: plastid division protein PDV2-like [Jatropha curcas]

Gene co-expression network

sample Hb_138585_110 Hb_138585_110 Hb_000796_250 Hb_000796_250 Hb_138585_110--Hb_000796_250 Hb_001529_050 Hb_001529_050 Hb_138585_110--Hb_001529_050 Hb_004230_040 Hb_004230_040 Hb_138585_110--Hb_004230_040 Hb_001507_100 Hb_001507_100 Hb_138585_110--Hb_001507_100 Hb_001104_240 Hb_001104_240 Hb_138585_110--Hb_001104_240 Hb_010334_020 Hb_010334_020 Hb_138585_110--Hb_010334_020 Hb_001117_070 Hb_001117_070 Hb_000796_250--Hb_001117_070 Hb_000318_200 Hb_000318_200 Hb_000796_250--Hb_000318_200 Hb_000260_290 Hb_000260_290 Hb_000796_250--Hb_000260_290 Hb_001049_020 Hb_001049_020 Hb_000796_250--Hb_001049_020 Hb_000796_250--Hb_004230_040 Hb_001269_690 Hb_001269_690 Hb_001529_050--Hb_001269_690 Hb_001529_050--Hb_001104_240 Hb_000140_410 Hb_000140_410 Hb_001529_050--Hb_000140_410 Hb_003623_070 Hb_003623_070 Hb_001529_050--Hb_003623_070 Hb_000086_660 Hb_000086_660 Hb_001529_050--Hb_000086_660 Hb_002028_220 Hb_002028_220 Hb_004230_040--Hb_002028_220 Hb_000390_150 Hb_000390_150 Hb_004230_040--Hb_000390_150 Hb_000923_050 Hb_000923_050 Hb_004230_040--Hb_000923_050 Hb_001902_190 Hb_001902_190 Hb_004230_040--Hb_001902_190 Hb_028872_060 Hb_028872_060 Hb_004230_040--Hb_028872_060 Hb_002400_400 Hb_002400_400 Hb_004230_040--Hb_002400_400 Hb_003160_020 Hb_003160_020 Hb_001507_100--Hb_003160_020 Hb_001507_100--Hb_001104_240 Hb_089497_010 Hb_089497_010 Hb_001507_100--Hb_089497_010 Hb_004242_190 Hb_004242_190 Hb_001507_100--Hb_004242_190 Hb_112023_010 Hb_112023_010 Hb_001507_100--Hb_112023_010 Hb_006586_030 Hb_006586_030 Hb_001104_240--Hb_006586_030 Hb_001104_240--Hb_000086_660 Hb_001104_240--Hb_001269_690 Hb_002827_020 Hb_002827_020 Hb_001104_240--Hb_002827_020 Hb_000200_280 Hb_000200_280 Hb_001104_240--Hb_000200_280 Hb_001148_030 Hb_001148_030 Hb_010334_020--Hb_001148_030 Hb_000005_250 Hb_000005_250 Hb_010334_020--Hb_000005_250 Hb_000093_150 Hb_000093_150 Hb_010334_020--Hb_000093_150 Hb_000645_210 Hb_000645_210 Hb_010334_020--Hb_000645_210 Hb_004462_010 Hb_004462_010 Hb_010334_020--Hb_004462_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.323515 0.529599 0.0771771 0.149954 0.118751 0.266179
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.465069 0.411451 0.250494 1.2722 0

CAGE analysis