Hb_000005_250

Information

Type -
Description -
Location Contig5: 258617-260308
Sequence    

Annotation

kegg
ID rcu:RCOM_0474380
description hypothetical protein
nr
ID XP_002523712.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID F4I9E1
description Protein NUCLEAR FUSION DEFECTIVE 4 OS=Arabidopsis thaliana GN=NFD4 PE=3 SV=1
trembl
ID B9SCJ3
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0474380 PE=4 SV=1
Gene Ontology
ID GO:0005886
description nodulin family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000005_250 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_014894_010 0.17666852 - - hypothetical protein CICLE_v10001869mg [Citrus clementina]
3 Hb_001258_060 0.1769928228 - - PREDICTED: phosphoenolpyruvate carboxykinase [ATP] [Jatropha curcas]
4 Hb_001246_030 0.1803124606 - - hypothetical protein JCGZ_14672 [Jatropha curcas]
5 Hb_001946_030 0.1866443264 - - grr1, plant, putative [Ricinus communis]
6 Hb_010334_020 0.1951547449 - - PREDICTED: inactive protein RESTRICTED TEV MOVEMENT 1-like [Sesamum indicum]
7 Hb_039145_010 0.1976094626 - - eukaryotic translation initiation factor 2c, putative [Ricinus communis]
8 Hb_000120_390 0.2014769132 - - PREDICTED: uncharacterized transporter YBR287W-like [Jatropha curcas]
9 Hb_000318_200 0.2046191319 - - PREDICTED: hyoscyamine 6-dioxygenase-like [Jatropha curcas]
10 Hb_001623_160 0.2056911821 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At2g33170 [Jatropha curcas]
11 Hb_007763_030 0.2080123244 - - PREDICTED: uncharacterized protein LOC105638154 [Jatropha curcas]
12 Hb_000417_320 0.2097790304 - - hypothetical protein CICLE_v10000333mg [Citrus clementina]
13 Hb_150360_020 0.2145256668 - - PREDICTED: N-alpha-acetyltransferase 11 [Jatropha curcas]
14 Hb_007943_160 0.2160675028 - - PREDICTED: aspartate aminotransferase, cytoplasmic [Jatropha curcas]
15 Hb_138585_110 0.2169629021 - - -
16 Hb_119494_010 0.2170105875 - - PREDICTED: box C/D snoRNA protein 1 [Jatropha curcas]
17 Hb_001332_040 0.2172872344 - - PREDICTED: transcription initiation factor IIB [Fragaria vesca subsp. vesca]
18 Hb_028811_010 0.2175499636 - - PREDICTED: uncharacterized protein LOC105650178 isoform X1 [Jatropha curcas]
19 Hb_000796_250 0.2204977774 transcription factor TF Family: WRKY WRKY1 [Hevea brasiliensis]
20 Hb_004079_080 0.2210069645 - - PREDICTED: ras-related protein RHN1-like [Jatropha curcas]

Gene co-expression network

sample Hb_000005_250 Hb_000005_250 Hb_014894_010 Hb_014894_010 Hb_000005_250--Hb_014894_010 Hb_001258_060 Hb_001258_060 Hb_000005_250--Hb_001258_060 Hb_001246_030 Hb_001246_030 Hb_000005_250--Hb_001246_030 Hb_001946_030 Hb_001946_030 Hb_000005_250--Hb_001946_030 Hb_010334_020 Hb_010334_020 Hb_000005_250--Hb_010334_020 Hb_039145_010 Hb_039145_010 Hb_000005_250--Hb_039145_010 Hb_014894_010--Hb_001246_030 Hb_119494_010 Hb_119494_010 Hb_014894_010--Hb_119494_010 Hb_002005_100 Hb_002005_100 Hb_014894_010--Hb_002005_100 Hb_014894_010--Hb_001258_060 Hb_004079_080 Hb_004079_080 Hb_014894_010--Hb_004079_080 Hb_008864_090 Hb_008864_090 Hb_014894_010--Hb_008864_090 Hb_004242_190 Hb_004242_190 Hb_001258_060--Hb_004242_190 Hb_001258_060--Hb_008864_090 Hb_001258_060--Hb_001246_030 Hb_000805_320 Hb_000805_320 Hb_001258_060--Hb_000805_320 Hb_007763_030 Hb_007763_030 Hb_001258_060--Hb_007763_030 Hb_001157_110 Hb_001157_110 Hb_001246_030--Hb_001157_110 Hb_000497_110 Hb_000497_110 Hb_001246_030--Hb_000497_110 Hb_098315_080 Hb_098315_080 Hb_001246_030--Hb_098315_080 Hb_001246_030--Hb_119494_010 Hb_001246_030--Hb_002005_100 Hb_028811_010 Hb_028811_010 Hb_001946_030--Hb_028811_010 Hb_183623_010 Hb_183623_010 Hb_001946_030--Hb_183623_010 Hb_001206_090 Hb_001206_090 Hb_001946_030--Hb_001206_090 Hb_001623_160 Hb_001623_160 Hb_001946_030--Hb_001623_160 Hb_001946_030--Hb_004079_080 Hb_138585_110 Hb_138585_110 Hb_010334_020--Hb_138585_110 Hb_001148_030 Hb_001148_030 Hb_010334_020--Hb_001148_030 Hb_000093_150 Hb_000093_150 Hb_010334_020--Hb_000093_150 Hb_000645_210 Hb_000645_210 Hb_010334_020--Hb_000645_210 Hb_004462_010 Hb_004462_010 Hb_010334_020--Hb_004462_010 Hb_039145_010--Hb_014894_010 Hb_000417_320 Hb_000417_320 Hb_039145_010--Hb_000417_320 Hb_039145_010--Hb_001246_030 Hb_039145_010--Hb_008864_090 Hb_039145_010--Hb_002005_100 Hb_039145_010--Hb_119494_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.80491 5.98634 0.589917 8.49618 1.56457 5.39204
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.602 6.10314 13.4553 38.3466 1.75541

CAGE analysis