Hb_004462_010

Information

Type -
Description -
Location Contig4462: 7739-12450
Sequence    

Annotation

kegg
ID rcu:RCOM_0678060
description Amine oxidase [copper-containing] precursor, putative
nr
ID XP_012069921.1
description PREDICTED: primary amine oxidase-like [Jatropha curcas]
swissprot
ID P49252
description Primary amine oxidase (Fragment) OS=Lens culinaris PE=1 SV=3
trembl
ID B9RSR3
description Amine oxidase OS=Ricinus communis GN=RCOM_0678060 PE=3 SV=1
Gene Ontology
ID GO:0005507
description primary amine oxidase-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43027: 8630-9925
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004462_010 0.0 - - PREDICTED: primary amine oxidase-like [Jatropha curcas]
2 Hb_000544_100 0.1679695824 - - hypothetical protein JCGZ_03636 [Jatropha curcas]
3 Hb_000093_150 0.1761362433 - - 6-phosphogluconolactonase, putative [Ricinus communis]
4 Hb_127886_010 0.1866875276 - - PREDICTED: putative nuclease HARBI1 [Jatropha curcas]
5 Hb_001524_090 0.1953303468 - - PREDICTED: uncharacterized protein LOC105113929 [Populus euphratica]
6 Hb_001636_020 0.2010463503 - - Serine/threonine-protein kinase PBS1 [Theobroma cacao]
7 Hb_000209_110 0.2044662747 - - PREDICTED: receptor-like protein kinase BRI1-like 3 [Jatropha curcas]
8 Hb_007943_160 0.2087339161 - - PREDICTED: aspartate aminotransferase, cytoplasmic [Jatropha curcas]
9 Hb_006586_030 0.2112458202 - - PREDICTED: transcription factor LHW isoform X1 [Jatropha curcas]
10 Hb_010334_020 0.2170147649 - - PREDICTED: inactive protein RESTRICTED TEV MOVEMENT 1-like [Sesamum indicum]
11 Hb_000645_210 0.2173883278 transcription factor TF Family: CAMTA PREDICTED: calmodulin-binding transcription activator 5-like isoform X2 [Jatropha curcas]
12 Hb_004724_120 0.2176107958 - - PREDICTED: ferredoxin, root R-B2 [Jatropha curcas]
13 Hb_003073_180 0.2221763667 - - hypothetical protein JCGZ_20198 [Jatropha curcas]
14 Hb_000733_210 0.2237366281 - - putative serine/threonine protein phosphatase [Angiostrongylus costaricensis]
15 Hb_000928_040 0.228421168 - - cytochrome P450, putative [Ricinus communis]
16 Hb_002666_020 0.2286398794 - - VAMP/SYNAPTOBREVIN-ASSOCIATED protein 27-1 [Populus trichocarpa]
17 Hb_001206_090 0.2305379507 - - pyruvate decarboxylase [Hevea brasiliensis]
18 Hb_001780_150 0.2306574173 - - ceramidase, putative [Ricinus communis]
19 Hb_001089_040 0.2358048616 transcription factor TF Family: bHLH DNA-directed RNA polymerase beta chain, putative [Ricinus communis]
20 Hb_001009_080 0.2373355939 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_004462_010 Hb_004462_010 Hb_000544_100 Hb_000544_100 Hb_004462_010--Hb_000544_100 Hb_000093_150 Hb_000093_150 Hb_004462_010--Hb_000093_150 Hb_127886_010 Hb_127886_010 Hb_004462_010--Hb_127886_010 Hb_001524_090 Hb_001524_090 Hb_004462_010--Hb_001524_090 Hb_001636_020 Hb_001636_020 Hb_004462_010--Hb_001636_020 Hb_000209_110 Hb_000209_110 Hb_004462_010--Hb_000209_110 Hb_000544_100--Hb_000209_110 Hb_004724_120 Hb_004724_120 Hb_000544_100--Hb_004724_120 Hb_002477_220 Hb_002477_220 Hb_000544_100--Hb_002477_220 Hb_000544_100--Hb_001636_020 Hb_182680_010 Hb_182680_010 Hb_000544_100--Hb_182680_010 Hb_000928_040 Hb_000928_040 Hb_000093_150--Hb_000928_040 Hb_000093_150--Hb_127886_010 Hb_000645_210 Hb_000645_210 Hb_000093_150--Hb_000645_210 Hb_003517_020 Hb_003517_020 Hb_000093_150--Hb_003517_020 Hb_002304_140 Hb_002304_140 Hb_000093_150--Hb_002304_140 Hb_006717_070 Hb_006717_070 Hb_127886_010--Hb_006717_070 Hb_127886_010--Hb_000645_210 Hb_000227_040 Hb_000227_040 Hb_127886_010--Hb_000227_040 Hb_000395_220 Hb_000395_220 Hb_127886_010--Hb_000395_220 Hb_001780_150 Hb_001780_150 Hb_127886_010--Hb_001780_150 Hb_011287_010 Hb_011287_010 Hb_127886_010--Hb_011287_010 Hb_006586_030 Hb_006586_030 Hb_001524_090--Hb_006586_030 Hb_002827_020 Hb_002827_020 Hb_001524_090--Hb_002827_020 Hb_001104_240 Hb_001104_240 Hb_001524_090--Hb_001104_240 Hb_000733_210 Hb_000733_210 Hb_001524_090--Hb_000733_210 Hb_027445_050 Hb_027445_050 Hb_001524_090--Hb_027445_050 Hb_134894_010 Hb_134894_010 Hb_001524_090--Hb_134894_010 Hb_002972_020 Hb_002972_020 Hb_001636_020--Hb_002972_020 Hb_000406_060 Hb_000406_060 Hb_001636_020--Hb_000406_060 Hb_000021_030 Hb_000021_030 Hb_001636_020--Hb_000021_030 Hb_001009_080 Hb_001009_080 Hb_001636_020--Hb_001009_080 Hb_001427_070 Hb_001427_070 Hb_001636_020--Hb_001427_070 Hb_002836_100 Hb_002836_100 Hb_001636_020--Hb_002836_100 Hb_003073_180 Hb_003073_180 Hb_000209_110--Hb_003073_180 Hb_000209_110--Hb_006586_030 Hb_000209_110--Hb_000093_150 Hb_002407_080 Hb_002407_080 Hb_000209_110--Hb_002407_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.639871 1.65575 0.20347 1.80511 0.794229 1.74775
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.280837 0.429711 1.26673 7.06867 0.156967

CAGE analysis