Hb_039145_010

Information

Type -
Description -
Location Contig39145: 322-2189
Sequence    

Annotation

kegg
ID rcu:RCOM_0476750
description eukaryotic translation initiation factor 2c, putative
nr
ID XP_002523757.1
description eukaryotic translation initiation factor 2c, putative [Ricinus communis]
swissprot
ID Q9SJK3
description Protein argonaute 5 OS=Arabidopsis thaliana GN=AGO5 PE=1 SV=2
trembl
ID B9SCN8
description Protein argonaute OS=Ricinus communis GN=RCOM_0476750 PE=3 SV=1
Gene Ontology
ID GO:0005515
description argonaute family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_039145_010 0.0 - - eukaryotic translation initiation factor 2c, putative [Ricinus communis]
2 Hb_014894_010 0.1427168601 - - hypothetical protein CICLE_v10001869mg [Citrus clementina]
3 Hb_000417_320 0.1443437659 - - hypothetical protein CICLE_v10000333mg [Citrus clementina]
4 Hb_001246_030 0.1509259113 - - hypothetical protein JCGZ_14672 [Jatropha curcas]
5 Hb_008864_090 0.1529702761 - - PREDICTED: plastid division protein PDV2-like [Jatropha curcas]
6 Hb_002005_100 0.1541648081 - - -
7 Hb_119494_010 0.1556462817 - - PREDICTED: box C/D snoRNA protein 1 [Jatropha curcas]
8 Hb_028811_010 0.1711181678 - - PREDICTED: uncharacterized protein LOC105650178 isoform X1 [Jatropha curcas]
9 Hb_000227_040 0.1727687337 - - Stem-specific protein TSJT1, putative [Ricinus communis]
10 Hb_010029_020 0.1759577865 - - PREDICTED: serine/threonine-protein kinase CTR1 [Jatropha curcas]
11 Hb_001170_030 0.1770246839 - - synaptonemal complex protein, putative [Ricinus communis]
12 Hb_000041_060 0.1772886071 - - cinnamoyl-CoA reductase, putative [Ricinus communis]
13 Hb_009732_020 0.1778805766 - - PREDICTED: zinc-metallopeptidase, peroxisomal-like [Jatropha curcas]
14 Hb_001214_090 0.178861772 - - PREDICTED: acyl-coenzyme A oxidase 4, peroxisomal [Jatropha curcas]
15 Hb_001427_070 0.1800137289 - - PREDICTED: xaa-Pro dipeptidase [Jatropha curcas]
16 Hb_004411_060 0.1817458901 - - acetolactate synthase, putative [Ricinus communis]
17 Hb_004586_350 0.1821209447 - - Phosphoribosylaminoimidazole-succinocarboxamide synthase [Morus notabilis]
18 Hb_001089_040 0.1822426256 transcription factor TF Family: bHLH DNA-directed RNA polymerase beta chain, putative [Ricinus communis]
19 Hb_012545_090 0.184319529 - - hypothetical protein JCGZ_04320 [Jatropha curcas]
20 Hb_003253_050 0.1874564103 - - PREDICTED: IAA-amino acid hydrolase ILR1-like 3 [Jatropha curcas]

Gene co-expression network

sample Hb_039145_010 Hb_039145_010 Hb_014894_010 Hb_014894_010 Hb_039145_010--Hb_014894_010 Hb_000417_320 Hb_000417_320 Hb_039145_010--Hb_000417_320 Hb_001246_030 Hb_001246_030 Hb_039145_010--Hb_001246_030 Hb_008864_090 Hb_008864_090 Hb_039145_010--Hb_008864_090 Hb_002005_100 Hb_002005_100 Hb_039145_010--Hb_002005_100 Hb_119494_010 Hb_119494_010 Hb_039145_010--Hb_119494_010 Hb_014894_010--Hb_001246_030 Hb_014894_010--Hb_119494_010 Hb_014894_010--Hb_002005_100 Hb_001258_060 Hb_001258_060 Hb_014894_010--Hb_001258_060 Hb_004079_080 Hb_004079_080 Hb_014894_010--Hb_004079_080 Hb_014894_010--Hb_008864_090 Hb_000414_110 Hb_000414_110 Hb_000417_320--Hb_000414_110 Hb_000417_320--Hb_119494_010 Hb_000417_320--Hb_014894_010 Hb_000318_200 Hb_000318_200 Hb_000417_320--Hb_000318_200 Hb_028811_010 Hb_028811_010 Hb_000417_320--Hb_028811_010 Hb_001157_110 Hb_001157_110 Hb_001246_030--Hb_001157_110 Hb_000497_110 Hb_000497_110 Hb_001246_030--Hb_000497_110 Hb_098315_080 Hb_098315_080 Hb_001246_030--Hb_098315_080 Hb_001246_030--Hb_119494_010 Hb_001246_030--Hb_002005_100 Hb_008864_090--Hb_119494_010 Hb_001427_070 Hb_001427_070 Hb_008864_090--Hb_001427_070 Hb_010029_020 Hb_010029_020 Hb_008864_090--Hb_010029_020 Hb_077562_030 Hb_077562_030 Hb_008864_090--Hb_077562_030 Hb_008147_070 Hb_008147_070 Hb_008864_090--Hb_008147_070 Hb_002005_100--Hb_119494_010 Hb_000190_090 Hb_000190_090 Hb_002005_100--Hb_000190_090 Hb_019053_030 Hb_019053_030 Hb_002005_100--Hb_019053_030 Hb_004411_060 Hb_004411_060 Hb_002005_100--Hb_004411_060 Hb_001214_090 Hb_001214_090 Hb_002005_100--Hb_001214_090 Hb_016522_010 Hb_016522_010 Hb_002005_100--Hb_016522_010 Hb_003253_050 Hb_003253_050 Hb_119494_010--Hb_003253_050 Hb_002400_410 Hb_002400_410 Hb_119494_010--Hb_002400_410 Hb_119494_010--Hb_008147_070 Hb_119494_010--Hb_001214_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.05877 0.82161 0.316309 0.753122 0.423517 0.808976
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.804499 0.42172 1.04939 4.37333 0.952842

CAGE analysis