Hb_004411_060

Information

Type -
Description -
Location Contig4411: 92868-98153
Sequence    

Annotation

kegg
ID rcu:RCOM_0605940
description acetolactate synthase, putative (EC:2.2.1.6)
nr
ID XP_002529819.1
description acetolactate synthase, putative [Ricinus communis]
swissprot
ID Q93YZ7
description Acetolactate synthase small subunit 2, chloroplastic OS=Arabidopsis thaliana GN=At2g31810 PE=1 SV=1
trembl
ID B9SV00
description Acetolactate synthase, putative OS=Ricinus communis GN=RCOM_0605940 PE=4 SV=1
Gene Ontology
ID GO:0003984
description acetolactate synthase small subunit chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42678: 77437-98160
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004411_060 0.0 - - acetolactate synthase, putative [Ricinus communis]
2 Hb_098315_080 0.1046165179 - - methylmalonate-semialdehyde dehydrogenase, putative [Ricinus communis]
3 Hb_164898_010 0.108838234 - - Cysteine-rich protein, putative [Theobroma cacao]
4 Hb_006909_010 0.1098986404 - - 5-oxoprolinase, putative [Ricinus communis]
5 Hb_002005_100 0.1106968358 - - -
6 Hb_025193_040 0.1134584217 - - PREDICTED: uncharacterized protein LOC105647286 [Jatropha curcas]
7 Hb_003747_020 0.114582837 - - PREDICTED: acetyl-coenzyme A synthetase, chloroplastic/glyoxysomal isoform X1 [Jatropha curcas]
8 Hb_000106_120 0.1197478159 - - hypothetical protein glysoja_007050 [Glycine soja]
9 Hb_002338_050 0.1202297192 - - PREDICTED: uncharacterized protein LOC105118489 isoform X1 [Populus euphratica]
10 Hb_019337_020 0.1207999128 - - K+ uptake permease 11 isoform 1 [Theobroma cacao]
11 Hb_002908_050 0.1218344086 - - hypothetical protein CISIN_1g0022902mg, partial [Citrus sinensis]
12 Hb_000922_030 0.1225128345 - - PREDICTED: protein EXECUTER 2, chloroplastic [Jatropha curcas]
13 Hb_007023_030 0.1227709128 - - PREDICTED: pentatricopeptide repeat-containing protein At2g20710, mitochondrial-like [Jatropha curcas]
14 Hb_019053_030 0.1233251878 - - PREDICTED: sulfite oxidase [Jatropha curcas]
15 Hb_000358_050 0.1241221317 - - PREDICTED: uncharacterized protein LOC105633378 [Jatropha curcas]
16 Hb_000922_380 0.1247885934 - - PREDICTED: U3 small nucleolar ribonucleoprotein protein MPP10 isoform X1 [Jatropha curcas]
17 Hb_000053_060 0.1280117086 - - hypothetical protein VITISV_022618 [Vitis vinifera]
18 Hb_004800_200 0.1304103147 - - -
19 Hb_084670_010 0.130807648 - - PREDICTED: thiamine biosynthetic bifunctional enzyme TH1, chloroplastic isoform X1 [Jatropha curcas]
20 Hb_002025_330 0.1319394102 - - peptide transporter, putative [Ricinus communis]

Gene co-expression network

sample Hb_004411_060 Hb_004411_060 Hb_098315_080 Hb_098315_080 Hb_004411_060--Hb_098315_080 Hb_164898_010 Hb_164898_010 Hb_004411_060--Hb_164898_010 Hb_006909_010 Hb_006909_010 Hb_004411_060--Hb_006909_010 Hb_002005_100 Hb_002005_100 Hb_004411_060--Hb_002005_100 Hb_025193_040 Hb_025193_040 Hb_004411_060--Hb_025193_040 Hb_003747_020 Hb_003747_020 Hb_004411_060--Hb_003747_020 Hb_007023_030 Hb_007023_030 Hb_098315_080--Hb_007023_030 Hb_000053_060 Hb_000053_060 Hb_098315_080--Hb_000053_060 Hb_004449_080 Hb_004449_080 Hb_098315_080--Hb_004449_080 Hb_098315_080--Hb_006909_010 Hb_001452_210 Hb_001452_210 Hb_098315_080--Hb_001452_210 Hb_164898_010--Hb_006909_010 Hb_164898_010--Hb_004449_080 Hb_003294_090 Hb_003294_090 Hb_164898_010--Hb_003294_090 Hb_019337_020 Hb_019337_020 Hb_164898_010--Hb_019337_020 Hb_001227_080 Hb_001227_080 Hb_164898_010--Hb_001227_080 Hb_000106_120 Hb_000106_120 Hb_164898_010--Hb_000106_120 Hb_006909_010--Hb_004449_080 Hb_006909_010--Hb_000106_120 Hb_003498_130 Hb_003498_130 Hb_006909_010--Hb_003498_130 Hb_000028_390 Hb_000028_390 Hb_006909_010--Hb_000028_390 Hb_006909_010--Hb_003294_090 Hb_119494_010 Hb_119494_010 Hb_002005_100--Hb_119494_010 Hb_000190_090 Hb_000190_090 Hb_002005_100--Hb_000190_090 Hb_019053_030 Hb_019053_030 Hb_002005_100--Hb_019053_030 Hb_001214_090 Hb_001214_090 Hb_002005_100--Hb_001214_090 Hb_016522_010 Hb_016522_010 Hb_002005_100--Hb_016522_010 Hb_002025_330 Hb_002025_330 Hb_025193_040--Hb_002025_330 Hb_004143_160 Hb_004143_160 Hb_025193_040--Hb_004143_160 Hb_001963_100 Hb_001963_100 Hb_025193_040--Hb_001963_100 Hb_001440_030 Hb_001440_030 Hb_025193_040--Hb_001440_030 Hb_000922_030 Hb_000922_030 Hb_025193_040--Hb_000922_030 Hb_000872_010 Hb_000872_010 Hb_025193_040--Hb_000872_010 Hb_003994_150 Hb_003994_150 Hb_003747_020--Hb_003994_150 Hb_003747_020--Hb_000872_010 Hb_003747_020--Hb_019053_030 Hb_005147_030 Hb_005147_030 Hb_003747_020--Hb_005147_030 Hb_001105_020 Hb_001105_020 Hb_003747_020--Hb_001105_020 Hb_002968_080 Hb_002968_080 Hb_003747_020--Hb_002968_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.56824 9.89913 8.08921 13.4523 11.6663 16.8435
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.68693 12.2085 19.3917 45.4603 29.3475

CAGE analysis