Hb_004410_150

Information

Type transcription factor
Description TF Family: SRS
Location Contig4410: 141713-144153
Sequence    

Annotation

kegg
ID rcu:RCOM_1596220
description transcription factor, putative
nr
ID XP_012071961.1
description PREDICTED: protein SHI RELATED SEQUENCE 1 [Jatropha curcas]
swissprot
ID Q9LQZ5
description Protein SHI RELATED SEQUENCE 5 OS=Arabidopsis thaliana GN=SRS5 PE=2 SV=1
trembl
ID E6NU70
description JHL18I08.14 protein OS=Jatropha curcas GN=JHL18I08.14 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42673: 142079-142253 , PASA_asmbl_42675: 143033-143997
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004410_150 0.0 transcription factor TF Family: SRS PREDICTED: protein SHI RELATED SEQUENCE 1 [Jatropha curcas]
2 Hb_001625_010 0.1605865352 - - PREDICTED: glyoxylate/hydroxypyruvate reductase HPR3-like [Jatropha curcas]
3 Hb_002805_300 0.1625903115 - - PREDICTED: O-acyltransferase WSD1-like isoform X1 [Jatropha curcas]
4 Hb_001799_190 0.1792564852 - - PREDICTED: uncharacterized protein LOC105643221 [Jatropha curcas]
5 Hb_001248_030 0.1822685442 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
6 Hb_044724_010 0.1825310181 - - hypothetical protein JCGZ_01308 [Jatropha curcas]
7 Hb_002524_030 0.1887183687 - - -
8 Hb_000002_270 0.19663194 - - hypothetical protein VITISV_043897 [Vitis vinifera]
9 Hb_000083_130 0.200053131 - - hypothetical protein RCOM_0884570 [Ricinus communis]
10 Hb_007520_020 0.2017286125 rubber biosynthesis Gene Name: 1-deoxy-D-xylulose 5-phosphate reductoisomerase 1-deoxy-D-xylulose-5-phosphate reductoisomerase [Hevea brasiliensis]
11 Hb_000270_350 0.2048187387 transcription factor TF Family: MYB-related PREDICTED: transcription factor MYB1R1 [Jatropha curcas]
12 Hb_020805_170 0.2050676638 - - PREDICTED: F-box protein CPR30-like [Jatropha curcas]
13 Hb_002043_010 0.2058242201 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
14 Hb_000645_240 0.2073476185 - - AMP dependent ligase, putative [Ricinus communis]
15 Hb_000189_120 0.2074190336 transcription factor TF Family: bHLH PREDICTED: transcription factor UNE12-like isoform X5 [Jatropha curcas]
16 Hb_003894_100 0.2092801235 - - PREDICTED: AT-hook motif nuclear-localized protein 1-like [Jatropha curcas]
17 Hb_002781_010 0.2093611748 transcription factor TF Family: LUG PREDICTED: transcriptional corepressor LEUNIG-like isoform X1 [Jatropha curcas]
18 Hb_000140_410 0.2093975001 - - PREDICTED: uncharacterized protein At5g41620 isoform X1 [Jatropha curcas]
19 Hb_003544_070 0.2103558099 - - conserved hypothetical protein [Ricinus communis]
20 Hb_003576_050 0.2106999101 transcription factor TF Family: EIL ETHYLENE-INSENSITIVE3 protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_004410_150 Hb_004410_150 Hb_001625_010 Hb_001625_010 Hb_004410_150--Hb_001625_010 Hb_002805_300 Hb_002805_300 Hb_004410_150--Hb_002805_300 Hb_001799_190 Hb_001799_190 Hb_004410_150--Hb_001799_190 Hb_001248_030 Hb_001248_030 Hb_004410_150--Hb_001248_030 Hb_044724_010 Hb_044724_010 Hb_004410_150--Hb_044724_010 Hb_002524_030 Hb_002524_030 Hb_004410_150--Hb_002524_030 Hb_000083_130 Hb_000083_130 Hb_001625_010--Hb_000083_130 Hb_002781_010 Hb_002781_010 Hb_001625_010--Hb_002781_010 Hb_001625_010--Hb_001799_190 Hb_169051_010 Hb_169051_010 Hb_001625_010--Hb_169051_010 Hb_000216_020 Hb_000216_020 Hb_001625_010--Hb_000216_020 Hb_003398_070 Hb_003398_070 Hb_001625_010--Hb_003398_070 Hb_002805_300--Hb_001625_010 Hb_002805_300--Hb_003398_070 Hb_000270_350 Hb_000270_350 Hb_002805_300--Hb_000270_350 Hb_000866_370 Hb_000866_370 Hb_002805_300--Hb_000866_370 Hb_000002_270 Hb_000002_270 Hb_002805_300--Hb_000002_270 Hb_001699_150 Hb_001699_150 Hb_001799_190--Hb_001699_150 Hb_001414_040 Hb_001414_040 Hb_001799_190--Hb_001414_040 Hb_001675_010 Hb_001675_010 Hb_001799_190--Hb_001675_010 Hb_000395_220 Hb_000395_220 Hb_001799_190--Hb_000395_220 Hb_001322_180 Hb_001322_180 Hb_001799_190--Hb_001322_180 Hb_002524_020 Hb_002524_020 Hb_001799_190--Hb_002524_020 Hb_007416_150 Hb_007416_150 Hb_001248_030--Hb_007416_150 Hb_009823_010 Hb_009823_010 Hb_001248_030--Hb_009823_010 Hb_003576_050 Hb_003576_050 Hb_001248_030--Hb_003576_050 Hb_001408_050 Hb_001408_050 Hb_001248_030--Hb_001408_050 Hb_000638_090 Hb_000638_090 Hb_001248_030--Hb_000638_090 Hb_002304_140 Hb_002304_140 Hb_001248_030--Hb_002304_140 Hb_002774_090 Hb_002774_090 Hb_044724_010--Hb_002774_090 Hb_007259_040 Hb_007259_040 Hb_044724_010--Hb_007259_040 Hb_005779_040 Hb_005779_040 Hb_044724_010--Hb_005779_040 Hb_003894_100 Hb_003894_100 Hb_044724_010--Hb_003894_100 Hb_003504_040 Hb_003504_040 Hb_044724_010--Hb_003504_040 Hb_000661_260 Hb_000661_260 Hb_002524_030--Hb_000661_260 Hb_000735_070 Hb_000735_070 Hb_002524_030--Hb_000735_070 Hb_007472_080 Hb_007472_080 Hb_002524_030--Hb_007472_080 Hb_002153_030 Hb_002153_030 Hb_002524_030--Hb_002153_030 Hb_003517_020 Hb_003517_020 Hb_002524_030--Hb_003517_020 Hb_002524_030--Hb_001322_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.629621 1.47209 0.0931759 0.446972 0.12919 0.214491
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.153358 0.201102 0.0380128 1.58595 0.254107

CAGE analysis