Hb_000656_180

Information

Type -
Description -
Location Contig656: 118672-120415
Sequence    

Annotation

kegg
ID pop:POPTR_0001s16690g
description hypothetical protein
nr
ID XP_012068856.1
description PREDICTED: uncharacterized protein LOC105631371 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID U5GQ24
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s16690g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000656_180 0.0 - - PREDICTED: uncharacterized protein LOC105631371 [Jatropha curcas]
2 Hb_009683_050 0.248110017 - - wall-associated kinase, putative [Ricinus communis]
3 Hb_002445_130 0.2666058612 - - Disease resistance protein RGA2, putative [Ricinus communis]
4 Hb_086002_010 0.2703894737 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Jatropha curcas]
5 Hb_000659_020 0.2726445187 - - PREDICTED: putative L-type lectin-domain containing receptor kinase II.2 [Jatropha curcas]
6 Hb_133508_010 0.2740716862 transcription factor TF Family: C2C2-Dof PREDICTED: dof zinc finger protein DOF5.3-like [Jatropha curcas]
7 Hb_000029_410 0.2808052067 - - AT14A, putative [Ricinus communis]
8 Hb_127400_010 0.281438163 desease resistance Gene Name: NB-ARC phosphoprotein phosphatase, putative [Ricinus communis]
9 Hb_000836_590 0.2829562669 - - hypothetical protein JCGZ_14318 [Jatropha curcas]
10 Hb_136027_010 0.2833883727 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_26658 [Jatropha curcas]
11 Hb_003226_080 0.2836734487 - - PREDICTED: RING-H2 finger protein ATL5-like [Jatropha curcas]
12 Hb_008246_090 0.2864358658 - - -
13 Hb_001749_030 0.2884423193 - - -
14 Hb_001489_040 0.2892864722 - - PREDICTED: galactose oxidase [Jatropha curcas]
15 Hb_000000_140 0.2903842887 - - -
16 Hb_000032_190 0.2921282621 - - -
17 Hb_001846_040 0.2942579822 - - cytochrome P450, putative [Ricinus communis]
18 Hb_121913_010 0.2951488997 - - Disease resistance protein RPS5, putative [Ricinus communis]
19 Hb_133845_010 0.2961574426 transcription factor TF Family: NAC transcription factor, putative [Ricinus communis]
20 Hb_019654_010 0.2961913811 - - multicopper oxidase, putative [Ricinus communis]

Gene co-expression network

sample Hb_000656_180 Hb_000656_180 Hb_009683_050 Hb_009683_050 Hb_000656_180--Hb_009683_050 Hb_002445_130 Hb_002445_130 Hb_000656_180--Hb_002445_130 Hb_086002_010 Hb_086002_010 Hb_000656_180--Hb_086002_010 Hb_000659_020 Hb_000659_020 Hb_000656_180--Hb_000659_020 Hb_133508_010 Hb_133508_010 Hb_000656_180--Hb_133508_010 Hb_000029_410 Hb_000029_410 Hb_000656_180--Hb_000029_410 Hb_000086_610 Hb_000086_610 Hb_009683_050--Hb_000086_610 Hb_006538_030 Hb_006538_030 Hb_009683_050--Hb_006538_030 Hb_019654_010 Hb_019654_010 Hb_009683_050--Hb_019654_010 Hb_133845_010 Hb_133845_010 Hb_009683_050--Hb_133845_010 Hb_002660_090 Hb_002660_090 Hb_009683_050--Hb_002660_090 Hb_000322_120 Hb_000322_120 Hb_009683_050--Hb_000322_120 Hb_000805_040 Hb_000805_040 Hb_002445_130--Hb_000805_040 Hb_001863_270 Hb_001863_270 Hb_002445_130--Hb_001863_270 Hb_000610_060 Hb_000610_060 Hb_002445_130--Hb_000610_060 Hb_001989_060 Hb_001989_060 Hb_002445_130--Hb_001989_060 Hb_033327_010 Hb_033327_010 Hb_002445_130--Hb_033327_010 Hb_002122_030 Hb_002122_030 Hb_002445_130--Hb_002122_030 Hb_000061_100 Hb_000061_100 Hb_086002_010--Hb_000061_100 Hb_002475_010 Hb_002475_010 Hb_086002_010--Hb_002475_010 Hb_006198_060 Hb_006198_060 Hb_086002_010--Hb_006198_060 Hb_000116_350 Hb_000116_350 Hb_086002_010--Hb_000116_350 Hb_000685_130 Hb_000685_130 Hb_086002_010--Hb_000685_130 Hb_008040_060 Hb_008040_060 Hb_086002_010--Hb_008040_060 Hb_007137_030 Hb_007137_030 Hb_000659_020--Hb_007137_030 Hb_003226_080 Hb_003226_080 Hb_000659_020--Hb_003226_080 Hb_001079_030 Hb_001079_030 Hb_000659_020--Hb_001079_030 Hb_093177_010 Hb_093177_010 Hb_000659_020--Hb_093177_010 Hb_001514_060 Hb_001514_060 Hb_000659_020--Hb_001514_060 Hb_008246_090 Hb_008246_090 Hb_000659_020--Hb_008246_090 Hb_024357_010 Hb_024357_010 Hb_133508_010--Hb_024357_010 Hb_127400_010 Hb_127400_010 Hb_133508_010--Hb_127400_010 Hb_002239_030 Hb_002239_030 Hb_133508_010--Hb_002239_030 Hb_024857_010 Hb_024857_010 Hb_133508_010--Hb_024857_010 Hb_133508_010--Hb_007137_030 Hb_006911_060 Hb_006911_060 Hb_133508_010--Hb_006911_060 Hb_020967_010 Hb_020967_010 Hb_000029_410--Hb_020967_010 Hb_053519_010 Hb_053519_010 Hb_000029_410--Hb_053519_010 Hb_000336_190 Hb_000336_190 Hb_000029_410--Hb_000336_190 Hb_002053_030 Hb_002053_030 Hb_000029_410--Hb_002053_030 Hb_000345_500 Hb_000345_500 Hb_000029_410--Hb_000345_500 Hb_000029_410--Hb_002122_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.306105 0.0763114 0.0817255 0.046325 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0566761 0 0 0.0359314 0

CAGE analysis