Hb_159500_010

Information

Type -
Description -
Location Contig159500: 11-922
Sequence    

Annotation

kegg
ID tcc:TCM_003164
description hypothetical protein
nr
ID XP_012075160.1
description PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A061DPQ5
description Uncharacterized protein OS=Theobroma cacao GN=TCM_003164 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_159500_010 0.0 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
2 Hb_005686_070 0.3031764546 - - hypothetical protein RCOM_1078540 [Ricinus communis]
3 Hb_003020_080 0.326981017 - - -
4 Hb_000011_170 0.3895446281 - - PREDICTED: uncharacterized protein LOC105631661 [Jatropha curcas]
5 Hb_008725_160 0.3907354476 - - conserved hypothetical protein [Ricinus communis]
6 Hb_001205_010 0.3983415047 - - -
7 Hb_000313_020 0.4007618237 - - Endoplasmic reticulum vesicle transporter protein isoform 2, partial [Theobroma cacao]
8 Hb_000098_290 0.4167047706 - - -
9 Hb_022680_020 0.4178649284 - - PREDICTED: MLP-like protein 423 [Jatropha curcas]
10 Hb_032202_030 0.4179702901 - - -
11 Hb_096224_020 0.4198093307 - - hypothetical protein JCGZ_06980 [Jatropha curcas]
12 Hb_001623_530 0.4216151479 transcription factor TF Family: MYB myb family transcription factor family protein [Populus trichocarpa]
13 Hb_000139_160 0.4227464644 - - conserved hypothetical protein [Ricinus communis]
14 Hb_002282_040 0.4270045487 - - hypothetical protein VITISV_030841 [Vitis vinifera]
15 Hb_003322_010 0.4314419536 - - PREDICTED: TMV resistance protein N-like isoform X1 [Jatropha curcas]
16 Hb_002175_040 0.4388149221 - - PREDICTED: myb family transcription factor APL-like [Jatropha curcas]
17 Hb_001246_140 0.4392558271 - - -
18 Hb_003938_210 0.4430979545 - - triacylglycerol lipase, putative [Ricinus communis]
19 Hb_026205_030 0.445731979 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
20 Hb_007229_010 0.4517577205 - - PREDICTED: uncharacterized protein LOC105130855 [Populus euphratica]

Gene co-expression network

sample Hb_159500_010 Hb_159500_010 Hb_005686_070 Hb_005686_070 Hb_159500_010--Hb_005686_070 Hb_003020_080 Hb_003020_080 Hb_159500_010--Hb_003020_080 Hb_000011_170 Hb_000011_170 Hb_159500_010--Hb_000011_170 Hb_008725_160 Hb_008725_160 Hb_159500_010--Hb_008725_160 Hb_001205_010 Hb_001205_010 Hb_159500_010--Hb_001205_010 Hb_000313_020 Hb_000313_020 Hb_159500_010--Hb_000313_020 Hb_005686_070--Hb_008725_160 Hb_004310_010 Hb_004310_010 Hb_005686_070--Hb_004310_010 Hb_005686_070--Hb_001205_010 Hb_005686_070--Hb_000313_020 Hb_002539_030 Hb_002539_030 Hb_005686_070--Hb_002539_030 Hb_003322_010 Hb_003322_010 Hb_003020_080--Hb_003322_010 Hb_096224_020 Hb_096224_020 Hb_003020_080--Hb_096224_020 Hb_002282_040 Hb_002282_040 Hb_003020_080--Hb_002282_040 Hb_004931_010 Hb_004931_010 Hb_003020_080--Hb_004931_010 Hb_004931_080 Hb_004931_080 Hb_003020_080--Hb_004931_080 Hb_011457_020 Hb_011457_020 Hb_003020_080--Hb_011457_020 Hb_004453_030 Hb_004453_030 Hb_000011_170--Hb_004453_030 Hb_061390_010 Hb_061390_010 Hb_000011_170--Hb_061390_010 Hb_008880_010 Hb_008880_010 Hb_000011_170--Hb_008880_010 Hb_115350_010 Hb_115350_010 Hb_000011_170--Hb_115350_010 Hb_002779_020 Hb_002779_020 Hb_000011_170--Hb_002779_020 Hb_136696_010 Hb_136696_010 Hb_000011_170--Hb_136696_010 Hb_008725_160--Hb_001205_010 Hb_008725_160--Hb_000313_020 Hb_008725_160--Hb_002539_030 Hb_012019_040 Hb_012019_040 Hb_008725_160--Hb_012019_040 Hb_076223_020 Hb_076223_020 Hb_008725_160--Hb_076223_020 Hb_001205_010--Hb_000313_020 Hb_000092_160 Hb_000092_160 Hb_001205_010--Hb_000092_160 Hb_003041_040 Hb_003041_040 Hb_001205_010--Hb_003041_040 Hb_020763_020 Hb_020763_020 Hb_001205_010--Hb_020763_020 Hb_000313_020--Hb_000092_160 Hb_000313_020--Hb_003041_040 Hb_000313_020--Hb_020763_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0221193 0.0397423 0 0.0247989 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0607369 0 0 0.0192819 0

CAGE analysis