Hb_003020_080

Information

Type -
Description -
Location Contig3020: 57222-58284
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003020_080 0.0 - - -
2 Hb_003322_010 0.269643383 - - PREDICTED: TMV resistance protein N-like isoform X1 [Jatropha curcas]
3 Hb_096224_020 0.2837478318 - - hypothetical protein JCGZ_06980 [Jatropha curcas]
4 Hb_002282_040 0.2885586258 - - hypothetical protein VITISV_030841 [Vitis vinifera]
5 Hb_004931_010 0.2930877955 - - inosine triphosphate pyrophosphatase, putative [Ricinus communis]
6 Hb_004931_080 0.3059525965 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein ZAT5-like [Jatropha curcas]
7 Hb_011457_020 0.3107273589 - - PREDICTED: uncharacterized protein LOC105649960 [Jatropha curcas]
8 Hb_159500_010 0.326981017 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
9 Hb_000098_290 0.3340032967 - - -
10 Hb_009780_080 0.3433522495 - - PREDICTED: valine--tRNA ligase, mitochondrial isoform X2 [Jatropha curcas]
11 Hb_148891_010 0.3484406449 - - -
12 Hb_000062_410 0.3533682579 - - PREDICTED: uncharacterized protein LOC105644766 [Jatropha curcas]
13 Hb_000317_530 0.3550750827 - - hypothetical protein, partial [Pseudomonas fluorescens]
14 Hb_000803_040 0.36421225 - - -
15 Hb_000402_110 0.3644360988 - - hypothetical protein JCGZ_17786 [Jatropha curcas]
16 Hb_002301_360 0.3665234689 - - hypothetical protein CICLE_v10017252mg [Citrus clementina]
17 Hb_153216_010 0.3667608492 - - PREDICTED: uncharacterized protein LOC105797726 [Gossypium raimondii]
18 Hb_032202_030 0.3678472432 - - -
19 Hb_001366_080 0.3712444251 transcription factor TF Family: NAC NAC transcription factor 068 [Jatropha curcas]
20 Hb_132998_020 0.3802366294 - - acyl carrier protein 1, chloroplastic-like [Jatropha curcas]

Gene co-expression network

sample Hb_003020_080 Hb_003020_080 Hb_003322_010 Hb_003322_010 Hb_003020_080--Hb_003322_010 Hb_096224_020 Hb_096224_020 Hb_003020_080--Hb_096224_020 Hb_002282_040 Hb_002282_040 Hb_003020_080--Hb_002282_040 Hb_004931_010 Hb_004931_010 Hb_003020_080--Hb_004931_010 Hb_004931_080 Hb_004931_080 Hb_003020_080--Hb_004931_080 Hb_011457_020 Hb_011457_020 Hb_003020_080--Hb_011457_020 Hb_003322_010--Hb_004931_010 Hb_001221_560 Hb_001221_560 Hb_003322_010--Hb_001221_560 Hb_000098_290 Hb_000098_290 Hb_003322_010--Hb_000098_290 Hb_000803_040 Hb_000803_040 Hb_003322_010--Hb_000803_040 Hb_001377_400 Hb_001377_400 Hb_003322_010--Hb_001377_400 Hb_096224_020--Hb_002282_040 Hb_109268_010 Hb_109268_010 Hb_096224_020--Hb_109268_010 Hb_128051_010 Hb_128051_010 Hb_096224_020--Hb_128051_010 Hb_004525_060 Hb_004525_060 Hb_096224_020--Hb_004525_060 Hb_005779_050 Hb_005779_050 Hb_096224_020--Hb_005779_050 Hb_000693_020 Hb_000693_020 Hb_002282_040--Hb_000693_020 Hb_003209_050 Hb_003209_050 Hb_002282_040--Hb_003209_050 Hb_002282_040--Hb_128051_010 Hb_002282_040--Hb_003322_010 Hb_001186_080 Hb_001186_080 Hb_004931_010--Hb_001186_080 Hb_001017_080 Hb_001017_080 Hb_004931_010--Hb_001017_080 Hb_000191_030 Hb_000191_030 Hb_004931_010--Hb_000191_030 Hb_153216_010 Hb_153216_010 Hb_004931_010--Hb_153216_010 Hb_001504_050 Hb_001504_050 Hb_004931_010--Hb_001504_050 Hb_000959_310 Hb_000959_310 Hb_004931_080--Hb_000959_310 Hb_002301_360 Hb_002301_360 Hb_004931_080--Hb_002301_360 Hb_001140_070 Hb_001140_070 Hb_004931_080--Hb_001140_070 Hb_009780_080 Hb_009780_080 Hb_004931_080--Hb_009780_080 Hb_006970_080 Hb_006970_080 Hb_004931_080--Hb_006970_080 Hb_000510_330 Hb_000510_330 Hb_004931_080--Hb_000510_330 Hb_021888_090 Hb_021888_090 Hb_011457_020--Hb_021888_090 Hb_082730_010 Hb_082730_010 Hb_011457_020--Hb_082730_010 Hb_148891_010 Hb_148891_010 Hb_011457_020--Hb_148891_010 Hb_000713_020 Hb_000713_020 Hb_011457_020--Hb_000713_020 Hb_011242_030 Hb_011242_030 Hb_011457_020--Hb_011242_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.107678 0.117271 0.445897 0 0.109403 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.769998 0.201703 0 0.35679 0

CAGE analysis