Hb_153216_010

Information

Type -
Description -
Location Contig153216: 1782-2663
Sequence    

Annotation

kegg
ID -
description -
nr
ID XP_012483107.1
description PREDICTED: uncharacterized protein LOC105797726 [Gossypium raimondii]
swissprot
ID -
description -
trembl
ID Q60D42
description Zinc knuckle family protein OS=Solanum tuberosum GN=STB1_54t00006 PE=4 SV=2
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_153216_010 0.0 - - PREDICTED: uncharacterized protein LOC105797726 [Gossypium raimondii]
2 Hb_004931_010 0.2338596282 - - inosine triphosphate pyrophosphatase, putative [Ricinus communis]
3 Hb_092820_010 0.2552505684 - - hypothetical protein CISIN_1g033834mg [Citrus sinensis]
4 Hb_006588_010 0.2825556632 - - -
5 Hb_004691_040 0.3037717757 - - PREDICTED: uncharacterized protein LOC105775124 [Gossypium raimondii]
6 Hb_001017_080 0.3046750984 - - hypothetical protein POPTR_0010s06020g [Populus trichocarpa]
7 Hb_035905_010 0.3056900442 - - PREDICTED: uncharacterized protein LOC105627956 [Jatropha curcas]
8 Hb_001186_080 0.3058314578 - - PREDICTED: F-box protein FBW2-like [Nelumbo nucifera]
9 Hb_010422_080 0.3109171924 - - -
10 Hb_002240_080 0.3238965154 - - -
11 Hb_002615_100 0.3252675639 - - -
12 Hb_002983_060 0.3270666169 desease resistance Gene Name: NB-ARC Cc-nbs-lrr resistance protein, putative [Theobroma cacao]
13 Hb_137068_010 0.3294949968 - - hypothetical protein CISIN_1g003571mg [Citrus sinensis]
14 Hb_132998_020 0.3318925449 - - acyl carrier protein 1, chloroplastic-like [Jatropha curcas]
15 Hb_079268_010 0.3337209912 - - -
16 Hb_000108_100 0.333968314 - - PREDICTED: DNA polymerase epsilon subunit 2 isoform X2 [Jatropha curcas]
17 Hb_001204_020 0.3351166484 - - Uncharacterized protein TCM_021965 [Theobroma cacao]
18 Hb_148909_020 0.3395739416 - - PREDICTED: glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial [Jatropha curcas]
19 Hb_000088_210 0.3408057523 - - hypothetical protein POPTR_0013s11310g [Populus trichocarpa]
20 Hb_003142_050 0.3410594712 - - -

Gene co-expression network

sample Hb_153216_010 Hb_153216_010 Hb_004931_010 Hb_004931_010 Hb_153216_010--Hb_004931_010 Hb_092820_010 Hb_092820_010 Hb_153216_010--Hb_092820_010 Hb_006588_010 Hb_006588_010 Hb_153216_010--Hb_006588_010 Hb_004691_040 Hb_004691_040 Hb_153216_010--Hb_004691_040 Hb_001017_080 Hb_001017_080 Hb_153216_010--Hb_001017_080 Hb_035905_010 Hb_035905_010 Hb_153216_010--Hb_035905_010 Hb_001186_080 Hb_001186_080 Hb_004931_010--Hb_001186_080 Hb_004931_010--Hb_001017_080 Hb_003322_010 Hb_003322_010 Hb_004931_010--Hb_003322_010 Hb_000191_030 Hb_000191_030 Hb_004931_010--Hb_000191_030 Hb_001504_050 Hb_001504_050 Hb_004931_010--Hb_001504_050 Hb_002983_060 Hb_002983_060 Hb_092820_010--Hb_002983_060 Hb_004195_100 Hb_004195_100 Hb_092820_010--Hb_004195_100 Hb_002928_210 Hb_002928_210 Hb_092820_010--Hb_002928_210 Hb_005211_070 Hb_005211_070 Hb_092820_010--Hb_005211_070 Hb_007409_020 Hb_007409_020 Hb_092820_010--Hb_007409_020 Hb_012163_030 Hb_012163_030 Hb_006588_010--Hb_012163_030 Hb_002615_100 Hb_002615_100 Hb_006588_010--Hb_002615_100 Hb_001427_140 Hb_001427_140 Hb_006588_010--Hb_001427_140 Hb_006922_040 Hb_006922_040 Hb_006588_010--Hb_006922_040 Hb_002228_090 Hb_002228_090 Hb_006588_010--Hb_002228_090 Hb_006588_010--Hb_001186_080 Hb_004116_110 Hb_004116_110 Hb_004691_040--Hb_004116_110 Hb_004691_040--Hb_035905_010 Hb_015675_060 Hb_015675_060 Hb_004691_040--Hb_015675_060 Hb_002742_010 Hb_002742_010 Hb_004691_040--Hb_002742_010 Hb_000373_300 Hb_000373_300 Hb_004691_040--Hb_000373_300 Hb_004055_060 Hb_004055_060 Hb_004691_040--Hb_004055_060 Hb_000025_440 Hb_000025_440 Hb_001017_080--Hb_000025_440 Hb_156503_040 Hb_156503_040 Hb_001017_080--Hb_156503_040 Hb_109578_010 Hb_109578_010 Hb_001017_080--Hb_109578_010 Hb_000500_210 Hb_000500_210 Hb_001017_080--Hb_000500_210 Hb_000975_270 Hb_000975_270 Hb_001017_080--Hb_000975_270 Hb_000260_450 Hb_000260_450 Hb_035905_010--Hb_000260_450 Hb_003992_120 Hb_003992_120 Hb_035905_010--Hb_003992_120 Hb_035905_010--Hb_004116_110 Hb_001141_400 Hb_001141_400 Hb_035905_010--Hb_001141_400 Hb_000061_350 Hb_000061_350 Hb_035905_010--Hb_000061_350
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0415465 0 0.0264157 0 0.0309483 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0760653 0.119605 0 0.0485725 0

CAGE analysis