Hb_035905_010

Information

Type -
Description -
Location Contig35905: 11-1165
Sequence    

Annotation

kegg
ID cmo:103496240
description uncharacterized LOC103496240
nr
ID XP_012064618.1
description PREDICTED: uncharacterized protein LOC105627956 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A0B0MRU6
description Gag-Pol polyprotein OS=Gossypium arboreum GN=F383_26972 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_035905_010 0.0 - - PREDICTED: uncharacterized protein LOC105627956 [Jatropha curcas]
2 Hb_004691_040 0.1599507672 - - PREDICTED: uncharacterized protein LOC105775124 [Gossypium raimondii]
3 Hb_000260_450 0.2258868156 - - GTP binding protein, putative [Ricinus communis]
4 Hb_003992_120 0.2358614635 - - hypothetical protein MTR_6g089560 [Medicago truncatula]
5 Hb_004116_110 0.2382422016 - - hypothetical protein MTR_3g064100 [Medicago truncatula]
6 Hb_001141_400 0.2406610816 - - hypothetical protein B456_007G2854002, partial [Gossypium raimondii]
7 Hb_000061_350 0.2511103034 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000373_300 0.2582661 - - hypothetical protein F775_20382 [Aegilops tauschii]
9 Hb_004055_060 0.2664782494 - - PREDICTED: EPIDERMAL PATTERNING FACTOR-like protein 5 [Jatropha curcas]
10 Hb_002240_080 0.2667539935 - - -
11 Hb_002835_220 0.2687887073 - - PREDICTED: MATE efflux family protein 7 [Vitis vinifera]
12 Hb_028365_010 0.2710713225 - - PREDICTED: uncharacterized protein LOC105631661 [Jatropha curcas]
13 Hb_048197_010 0.2718058387 - - -
14 Hb_001959_300 0.2774497074 - - PREDICTED: 3-isopropylmalate dehydratase large subunit [Jatropha curcas]
15 Hb_002742_010 0.2786140264 - - PREDICTED: uncharacterized protein LOC104115978 [Nicotiana tomentosiformis]
16 Hb_001143_010 0.2806720291 - - -
17 Hb_003963_020 0.2819839598 - - PREDICTED: uncharacterized protein LOC100256672 [Vitis vinifera]
18 Hb_000861_050 0.2825822499 - - PREDICTED: transcription elongation factor SPT6-like isoform X1 [Populus euphratica]
19 Hb_002615_100 0.2849209761 - - -
20 Hb_007409_020 0.2857470023 - - -

Gene co-expression network

sample Hb_035905_010 Hb_035905_010 Hb_004691_040 Hb_004691_040 Hb_035905_010--Hb_004691_040 Hb_000260_450 Hb_000260_450 Hb_035905_010--Hb_000260_450 Hb_003992_120 Hb_003992_120 Hb_035905_010--Hb_003992_120 Hb_004116_110 Hb_004116_110 Hb_035905_010--Hb_004116_110 Hb_001141_400 Hb_001141_400 Hb_035905_010--Hb_001141_400 Hb_000061_350 Hb_000061_350 Hb_035905_010--Hb_000061_350 Hb_004691_040--Hb_004116_110 Hb_015675_060 Hb_015675_060 Hb_004691_040--Hb_015675_060 Hb_002742_010 Hb_002742_010 Hb_004691_040--Hb_002742_010 Hb_000373_300 Hb_000373_300 Hb_004691_040--Hb_000373_300 Hb_004055_060 Hb_004055_060 Hb_004691_040--Hb_004055_060 Hb_005321_030 Hb_005321_030 Hb_000260_450--Hb_005321_030 Hb_011931_050 Hb_011931_050 Hb_000260_450--Hb_011931_050 Hb_030565_070 Hb_030565_070 Hb_000260_450--Hb_030565_070 Hb_055259_010 Hb_055259_010 Hb_000260_450--Hb_055259_010 Hb_001153_080 Hb_001153_080 Hb_000260_450--Hb_001153_080 Hb_002843_190 Hb_002843_190 Hb_003992_120--Hb_002843_190 Hb_010812_090 Hb_010812_090 Hb_003992_120--Hb_010812_090 Hb_010128_110 Hb_010128_110 Hb_003992_120--Hb_010128_110 Hb_003992_120--Hb_001141_400 Hb_026766_010 Hb_026766_010 Hb_003992_120--Hb_026766_010 Hb_004116_110--Hb_015675_060 Hb_048197_010 Hb_048197_010 Hb_004116_110--Hb_048197_010 Hb_174107_010 Hb_174107_010 Hb_004116_110--Hb_174107_010 Hb_188382_010 Hb_188382_010 Hb_004116_110--Hb_188382_010 Hb_004116_110--Hb_002742_010 Hb_001141_400--Hb_000373_300 Hb_001141_400--Hb_002742_010 Hb_028365_010 Hb_028365_010 Hb_001141_400--Hb_028365_010 Hb_001141_400--Hb_010128_110 Hb_001141_400--Hb_188382_010 Hb_159085_010 Hb_159085_010 Hb_001141_400--Hb_159085_010 Hb_003963_020 Hb_003963_020 Hb_000061_350--Hb_003963_020 Hb_003209_030 Hb_003209_030 Hb_000061_350--Hb_003209_030 Hb_000107_370 Hb_000107_370 Hb_000061_350--Hb_000107_370 Hb_000061_350--Hb_048197_010 Hb_002301_240 Hb_002301_240 Hb_000061_350--Hb_002301_240
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0636426 0 0 0 0.0198825 0.0186777
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0971188 0.076386 0 0.0306933 0

CAGE analysis