Hb_003209_030

Information

Type -
Description -
Location Contig3209: 34495-39657
Sequence    

Annotation

kegg
ID cic:CICLE_v10033641mg
description hypothetical protein
nr
ID XP_012067747.1
description PREDICTED: heparanase-like protein 2 [Jatropha curcas]
swissprot
ID Q8L608
description Heparanase-like protein 2 OS=Arabidopsis thaliana GN=At5g61250 PE=2 SV=1
trembl
ID A0A022QJE3
description Uncharacterized protein (Fragment) OS=Erythranthe guttata GN=MIMGU_mgv1a026758mg PE=4 SV=1
Gene Ontology
ID GO:0016020
description heparanase-like protein 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003209_030 0.0 - - PREDICTED: heparanase-like protein 2 [Jatropha curcas]
2 Hb_000331_320 0.1541175404 - - -
3 Hb_008667_050 0.1688161002 - - PREDICTED: serine/threonine-protein kinase HT1-like [Malus domestica]
4 Hb_000453_210 0.1751539576 - - hypothetical protein PHAVU_006G019800g [Phaseolus vulgaris]
5 Hb_000529_240 0.1756168961 - - -
6 Hb_001495_060 0.1942177101 - - PREDICTED: probable aldo-keto reductase 1 [Jatropha curcas]
7 Hb_001047_140 0.2092192935 - - -
8 Hb_005690_020 0.2197078387 - - hypothetical protein POPTR_0006s08200g [Populus trichocarpa]
9 Hb_000331_310 0.2298879004 - - PREDICTED: uncharacterized protein LOC105640232 [Jatropha curcas]
10 Hb_000061_350 0.2322852517 - - conserved hypothetical protein [Ricinus communis]
11 Hb_002685_180 0.2437504211 transcription factor TF Family: LOB LOB domain-containing protein, putative [Ricinus communis]
12 Hb_004691_040 0.2451553707 - - PREDICTED: uncharacterized protein LOC105775124 [Gossypium raimondii]
13 Hb_079268_010 0.2458619771 - - -
14 Hb_001864_030 0.2508659636 - - thioredoxin h [Hevea brasiliensis]
15 Hb_048197_010 0.2513740456 - - -
16 Hb_030619_010 0.2514535554 - - -
17 Hb_000086_330 0.2529560004 - - PREDICTED: glutathione gamma-glutamylcysteinyltransferase 1 [Jatropha curcas]
18 Hb_056768_010 0.2545633283 - - PREDICTED: serine/threonine-protein kinase HT1 isoform X1 [Cicer arietinum]
19 Hb_001143_010 0.2551232107 - - -
20 Hb_029982_010 0.259746274 - - hypothetical protein CICLE_v10006145mg [Citrus clementina]

Gene co-expression network

sample Hb_003209_030 Hb_003209_030 Hb_000331_320 Hb_000331_320 Hb_003209_030--Hb_000331_320 Hb_008667_050 Hb_008667_050 Hb_003209_030--Hb_008667_050 Hb_000453_210 Hb_000453_210 Hb_003209_030--Hb_000453_210 Hb_000529_240 Hb_000529_240 Hb_003209_030--Hb_000529_240 Hb_001495_060 Hb_001495_060 Hb_003209_030--Hb_001495_060 Hb_001047_140 Hb_001047_140 Hb_003209_030--Hb_001047_140 Hb_000331_320--Hb_008667_050 Hb_000331_320--Hb_001047_140 Hb_005690_020 Hb_005690_020 Hb_000331_320--Hb_005690_020 Hb_000331_320--Hb_000529_240 Hb_000331_320--Hb_000453_210 Hb_008667_050--Hb_001047_140 Hb_008667_050--Hb_000453_210 Hb_008667_050--Hb_005690_020 Hb_008667_050--Hb_000529_240 Hb_001143_010 Hb_001143_010 Hb_000453_210--Hb_001143_010 Hb_000453_210--Hb_001495_060 Hb_002685_180 Hb_002685_180 Hb_000453_210--Hb_002685_180 Hb_000453_210--Hb_001047_140 Hb_000529_240--Hb_001495_060 Hb_000529_240--Hb_001047_140 Hb_000529_240--Hb_000453_210 Hb_001495_060--Hb_002685_180 Hb_001495_060--Hb_001143_010 Hb_001495_060--Hb_001047_140 Hb_001864_030 Hb_001864_030 Hb_001047_140--Hb_001864_030 Hb_000331_310 Hb_000331_310 Hb_001047_140--Hb_000331_310 Hb_004502_080 Hb_004502_080 Hb_001047_140--Hb_004502_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.027608 0.0340983 0 0.00480077 0.0650433 0.0430152
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.140905 0.135519 0 0.0293313 0

CAGE analysis