Hb_001047_140

Information

Type -
Description -
Location Contig1047: 93957-94250
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001047_140 0.0 - - -
2 Hb_000331_320 0.1587862202 - - -
3 Hb_001864_030 0.1619088591 - - thioredoxin h [Hevea brasiliensis]
4 Hb_008667_050 0.1635759488 - - PREDICTED: serine/threonine-protein kinase HT1-like [Malus domestica]
5 Hb_000453_210 0.1769370791 - - hypothetical protein PHAVU_006G019800g [Phaseolus vulgaris]
6 Hb_000331_310 0.1880414777 - - PREDICTED: uncharacterized protein LOC105640232 [Jatropha curcas]
7 Hb_004502_080 0.1907995305 - - hypothetical protein JCGZ_23578 [Jatropha curcas]
8 Hb_005690_020 0.1928696824 - - hypothetical protein POPTR_0006s08200g [Populus trichocarpa]
9 Hb_000086_330 0.1945538519 - - PREDICTED: glutathione gamma-glutamylcysteinyltransferase 1 [Jatropha curcas]
10 Hb_004586_450 0.2073382415 - - -
11 Hb_002301_240 0.2086329924 - - auxin-repressed protein-like protein ARP1 [Manihot esculenta]
12 Hb_003209_030 0.2092192935 - - PREDICTED: heparanase-like protein 2 [Jatropha curcas]
13 Hb_001495_060 0.2145323891 - - PREDICTED: probable aldo-keto reductase 1 [Jatropha curcas]
14 Hb_070820_010 0.2210832992 - - hypothetical protein B456_008G232800 [Gossypium raimondii]
15 Hb_000529_240 0.2244299984 - - -
16 Hb_000445_330 0.2272979986 - - conserved hypothetical protein [Ricinus communis]
17 Hb_027472_090 0.228900292 - - -
18 Hb_019033_010 0.2296800389 - - PREDICTED: uncharacterized protein LOC105643397 [Jatropha curcas]
19 Hb_002821_010 0.2304120487 - - PREDICTED: nucleolar protein 16 [Jatropha curcas]
20 Hb_009139_010 0.2324622179 - - putative Phospholipid-Diacylglycerol acyltransferase [Elaeis guineensis]

Gene co-expression network

sample Hb_001047_140 Hb_001047_140 Hb_000331_320 Hb_000331_320 Hb_001047_140--Hb_000331_320 Hb_001864_030 Hb_001864_030 Hb_001047_140--Hb_001864_030 Hb_008667_050 Hb_008667_050 Hb_001047_140--Hb_008667_050 Hb_000453_210 Hb_000453_210 Hb_001047_140--Hb_000453_210 Hb_000331_310 Hb_000331_310 Hb_001047_140--Hb_000331_310 Hb_004502_080 Hb_004502_080 Hb_001047_140--Hb_004502_080 Hb_000331_320--Hb_008667_050 Hb_003209_030 Hb_003209_030 Hb_000331_320--Hb_003209_030 Hb_005690_020 Hb_005690_020 Hb_000331_320--Hb_005690_020 Hb_000529_240 Hb_000529_240 Hb_000331_320--Hb_000529_240 Hb_000331_320--Hb_000453_210 Hb_001864_030--Hb_000331_310 Hb_001623_240 Hb_001623_240 Hb_001864_030--Hb_001623_240 Hb_001864_030--Hb_000453_210 Hb_001047_150 Hb_001047_150 Hb_001864_030--Hb_001047_150 Hb_002301_240 Hb_002301_240 Hb_001864_030--Hb_002301_240 Hb_008667_050--Hb_000453_210 Hb_008667_050--Hb_003209_030 Hb_008667_050--Hb_005690_020 Hb_008667_050--Hb_000529_240 Hb_001143_010 Hb_001143_010 Hb_000453_210--Hb_001143_010 Hb_001495_060 Hb_001495_060 Hb_000453_210--Hb_001495_060 Hb_002685_180 Hb_002685_180 Hb_000453_210--Hb_002685_180 Hb_000453_210--Hb_003209_030 Hb_084934_010 Hb_084934_010 Hb_000331_310--Hb_084934_010 Hb_002918_280 Hb_002918_280 Hb_000331_310--Hb_002918_280 Hb_004607_140 Hb_004607_140 Hb_000331_310--Hb_004607_140 Hb_000163_200 Hb_000163_200 Hb_000331_310--Hb_000163_200 Hb_010883_210 Hb_010883_210 Hb_000331_310--Hb_010883_210 Hb_003058_070 Hb_003058_070 Hb_000331_310--Hb_003058_070 Hb_000175_040 Hb_000175_040 Hb_004502_080--Hb_000175_040 Hb_029888_020 Hb_029888_020 Hb_004502_080--Hb_029888_020 Hb_003057_050 Hb_003057_050 Hb_004502_080--Hb_003057_050 Hb_003057_130 Hb_003057_130 Hb_004502_080--Hb_003057_130 Hb_019033_010 Hb_019033_010 Hb_004502_080--Hb_019033_010 Hb_025246_010 Hb_025246_010 Hb_004502_080--Hb_025246_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.52581 7.64492 0.589117 1.26186 8.27429 12.3249
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
33.498 16.1504 1.74765 1.30009 0

CAGE analysis