Hb_001143_010

Information

Type -
Description -
Location Contig1143: 1580-4595
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001143_010 0.0 - - -
2 Hb_000453_210 0.1244241929 - - hypothetical protein PHAVU_006G019800g [Phaseolus vulgaris]
3 Hb_000861_050 0.1635565002 - - PREDICTED: transcription elongation factor SPT6-like isoform X1 [Populus euphratica]
4 Hb_150299_030 0.1644433588 - - conserved hypothetical protein [Ricinus communis]
5 Hb_005410_030 0.1708176699 - - glutaredoxin 2 [Hevea brasiliensis]
6 Hb_004055_060 0.1725839143 - - PREDICTED: EPIDERMAL PATTERNING FACTOR-like protein 5 [Jatropha curcas]
7 Hb_004958_050 0.1800151976 - - hypothetical protein CICLE_v10032980mg [Citrus clementina]
8 Hb_003023_050 0.1873273076 - - hypothetical protein POPTR_0013s10320g [Populus trichocarpa]
9 Hb_000175_040 0.1878848967 - - hypothetical protein JCGZ_06119 [Jatropha curcas]
10 Hb_000580_160 0.1974937621 - - Nitrate transporter 1.5 [Morus notabilis]
11 Hb_002471_170 0.19845301 - - -
12 Hb_004502_080 0.198795576 - - hypothetical protein JCGZ_23578 [Jatropha curcas]
13 Hb_000526_020 0.201706999 - - thioredoxin-like family protein [Hevea brasiliensis]
14 Hb_000052_010 0.2019847594 - - hypothetical protein M569_08416, partial [Genlisea aurea]
15 Hb_003057_130 0.2028572019 - - -
16 Hb_001495_060 0.2037751318 - - PREDICTED: probable aldo-keto reductase 1 [Jatropha curcas]
17 Hb_008667_050 0.2038519561 - - PREDICTED: serine/threonine-protein kinase HT1-like [Malus domestica]
18 Hb_003592_070 0.2042365371 - - -
19 Hb_002233_110 0.2066901257 - - PREDICTED: nuclear transcription factor Y subunit B-3-like [Jatropha curcas]
20 Hb_004048_010 0.2081035464 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570-like [Citrus sinensis]

Gene co-expression network

sample Hb_001143_010 Hb_001143_010 Hb_000453_210 Hb_000453_210 Hb_001143_010--Hb_000453_210 Hb_000861_050 Hb_000861_050 Hb_001143_010--Hb_000861_050 Hb_150299_030 Hb_150299_030 Hb_001143_010--Hb_150299_030 Hb_005410_030 Hb_005410_030 Hb_001143_010--Hb_005410_030 Hb_004055_060 Hb_004055_060 Hb_001143_010--Hb_004055_060 Hb_004958_050 Hb_004958_050 Hb_001143_010--Hb_004958_050 Hb_001495_060 Hb_001495_060 Hb_000453_210--Hb_001495_060 Hb_002685_180 Hb_002685_180 Hb_000453_210--Hb_002685_180 Hb_008667_050 Hb_008667_050 Hb_000453_210--Hb_008667_050 Hb_003209_030 Hb_003209_030 Hb_000453_210--Hb_003209_030 Hb_001047_140 Hb_001047_140 Hb_000453_210--Hb_001047_140 Hb_000861_050--Hb_005410_030 Hb_000052_010 Hb_000052_010 Hb_000861_050--Hb_000052_010 Hb_003023_050 Hb_003023_050 Hb_000861_050--Hb_003023_050 Hb_000861_050--Hb_004055_060 Hb_000714_010 Hb_000714_010 Hb_000861_050--Hb_000714_010 Hb_000005_030 Hb_000005_030 Hb_000861_050--Hb_000005_030 Hb_150299_030--Hb_004958_050 Hb_000526_020 Hb_000526_020 Hb_150299_030--Hb_000526_020 Hb_011689_050 Hb_011689_050 Hb_150299_030--Hb_011689_050 Hb_150299_030--Hb_000052_010 Hb_002781_020 Hb_002781_020 Hb_150299_030--Hb_002781_020 Hb_034585_040 Hb_034585_040 Hb_150299_030--Hb_034585_040 Hb_001109_120 Hb_001109_120 Hb_005410_030--Hb_001109_120 Hb_005410_030--Hb_000005_030 Hb_000580_160 Hb_000580_160 Hb_005410_030--Hb_000580_160 Hb_012799_060 Hb_012799_060 Hb_005410_030--Hb_012799_060 Hb_012779_110 Hb_012779_110 Hb_005410_030--Hb_012779_110 Hb_004055_060--Hb_003023_050 Hb_001279_250 Hb_001279_250 Hb_004055_060--Hb_001279_250 Hb_004055_060--Hb_000052_010 Hb_004055_060--Hb_000580_160 Hb_010166_020 Hb_010166_020 Hb_004055_060--Hb_010166_020 Hb_002492_020 Hb_002492_020 Hb_004055_060--Hb_002492_020 Hb_002234_210 Hb_002234_210 Hb_004958_050--Hb_002234_210 Hb_004958_050--Hb_011689_050 Hb_001616_020 Hb_001616_020 Hb_004958_050--Hb_001616_020 Hb_000634_050 Hb_000634_050 Hb_004958_050--Hb_000634_050 Hb_000526_150 Hb_000526_150 Hb_004958_050--Hb_000526_150 Hb_003638_080 Hb_003638_080 Hb_004958_050--Hb_003638_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.18271 1.85715 0.382983 0.21895 3.08856 3.03709
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
15.1449 15.1868 0.921088 0.329379 0.169694

CAGE analysis