Hb_002301_240

Information

Type -
Description -
Location Contig2301: 254561-255724
Sequence    

Annotation

kegg
ID rcu:RCOM_1673900
description Auxin-repressed 12.5 kDa protein, putative
nr
ID AAX84677.1
description auxin-repressed protein-like protein ARP1 [Manihot esculenta]
swissprot
ID Q05349
description Auxin-repressed 12.5 kDa protein OS=Fragaria ananassa PE=2 SV=1
trembl
ID Q52QX4
description Auxin-repressed protein-like protein ARP1 OS=Manihot esculenta PE=2 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24150: 254698-256013 , PASA_asmbl_24151: 254749-256013 , PASA_asmbl_24152: 254749-255998 , PASA_asmbl_24153: 254746-256014 , PASA_asmbl_24154: 254747-256013
cDNA
(Sanger)
(ID:Location)		 008_G18.ab1: 254747-255938 , 017_E10.ab1: 255023-255964 , 020_D18.ab1: 254747-255927 , 020_F06.ab1: 254747-256001 , 020_P09.ab1: 254748-256008 , 021_A07.ab1: 254749-255626 , 027_D18.ab1: 254749-255960 , 027_H16.ab1: 254746-256014 , 035_F16.ab1: 254747-256003 , 036_B12.ab1: 254743-255969 , 036_C24.ab1: 254747-255927 , 037_C17.ab1: 254749-255966 , 037_G14.ab1: 254748-256008 , 038_F23.ab1: 254749-255966 , 041_F16.ab1: 254749-255960 , 041_M18.ab1: 254747-255972 , 042_P16.ab1: 254748-255973 , 044_K06.ab1: 254698-255960 , 047_O21.ab1: 254748-255966 , 051_N17.ab1: 254748-255932 , 053_B16.ab1: 254749-256006 , 053_E03.ab1: 254750-255982

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002301_240 0.0 - - auxin-repressed protein-like protein ARP1 [Manihot esculenta]
2 Hb_019033_010 0.1850438846 - - PREDICTED: uncharacterized protein LOC105643397 [Jatropha curcas]
3 Hb_000086_330 0.1882719861 - - PREDICTED: glutathione gamma-glutamylcysteinyltransferase 1 [Jatropha curcas]
4 Hb_025246_010 0.2031865959 - - -
5 Hb_056196_070 0.2042156043 transcription factor TF Family: AUX/IAA PREDICTED: auxin-responsive protein IAA26-like [Jatropha curcas]
6 Hb_002835_220 0.2069021155 - - PREDICTED: MATE efflux family protein 7 [Vitis vinifera]
7 Hb_070820_010 0.2071365187 - - hypothetical protein B456_008G232800 [Gossypium raimondii]
8 Hb_001047_140 0.2086329924 - - -
9 Hb_003398_060 0.2105995048 - - PREDICTED: rRNA methyltransferase 2, mitochondrial isoform X1 [Jatropha curcas]
10 Hb_004502_080 0.2114410182 - - hypothetical protein JCGZ_23578 [Jatropha curcas]
11 Hb_001864_030 0.2130350155 - - thioredoxin h [Hevea brasiliensis]
12 Hb_000699_110 0.2175140248 - - hypothetical protein POPTR_0013s04180g [Populus trichocarpa]
13 Hb_001248_020 0.2182382247 - - PREDICTED: uncharacterized protein At2g23090-like [Jatropha curcas]
14 Hb_002805_290 0.2222913205 transcription factor TF Family: GRAS transcription factor, putative [Ricinus communis]
15 Hb_001623_240 0.2236963165 - - hypothetical protein VITISV_004933 [Vitis vinifera]
16 Hb_003057_050 0.2270377659 - - PREDICTED: uncharacterized protein LOC105635336 [Jatropha curcas]
17 Hb_000445_330 0.2298484394 - - conserved hypothetical protein [Ricinus communis]
18 Hb_003057_130 0.2298585783 - - -
19 Hb_009158_030 0.2300279541 transcription factor TF Family: HB homeobox leucine zipper family protein [Populus trichocarpa]
20 Hb_000613_200 0.2350352753 rubber biosynthesis Gene Name: Acetyl-CoA acetyltransferase acetyl-CoA C-acetyltransferase [Hevea brasiliensis]

Gene co-expression network

sample Hb_002301_240 Hb_002301_240 Hb_019033_010 Hb_019033_010 Hb_002301_240--Hb_019033_010 Hb_000086_330 Hb_000086_330 Hb_002301_240--Hb_000086_330 Hb_025246_010 Hb_025246_010 Hb_002301_240--Hb_025246_010 Hb_056196_070 Hb_056196_070 Hb_002301_240--Hb_056196_070 Hb_002835_220 Hb_002835_220 Hb_002301_240--Hb_002835_220 Hb_070820_010 Hb_070820_010 Hb_002301_240--Hb_070820_010 Hb_000699_110 Hb_000699_110 Hb_019033_010--Hb_000699_110 Hb_004502_080 Hb_004502_080 Hb_019033_010--Hb_004502_080 Hb_001437_050 Hb_001437_050 Hb_019033_010--Hb_001437_050 Hb_000175_040 Hb_000175_040 Hb_019033_010--Hb_000175_040 Hb_068804_150 Hb_068804_150 Hb_019033_010--Hb_068804_150 Hb_074197_010 Hb_074197_010 Hb_019033_010--Hb_074197_010 Hb_000086_330--Hb_070820_010 Hb_000445_330 Hb_000445_330 Hb_000086_330--Hb_000445_330 Hb_001047_140 Hb_001047_140 Hb_000086_330--Hb_001047_140 Hb_000086_330--Hb_004502_080 Hb_030765_010 Hb_030765_010 Hb_000086_330--Hb_030765_010 Hb_003057_130 Hb_003057_130 Hb_025246_010--Hb_003057_130 Hb_003057_050 Hb_003057_050 Hb_025246_010--Hb_003057_050 Hb_036369_010 Hb_036369_010 Hb_025246_010--Hb_036369_010 Hb_001248_020 Hb_001248_020 Hb_025246_010--Hb_001248_020 Hb_025246_010--Hb_000699_110 Hb_000984_190 Hb_000984_190 Hb_025246_010--Hb_000984_190 Hb_005565_030 Hb_005565_030 Hb_056196_070--Hb_005565_030 Hb_009158_030 Hb_009158_030 Hb_056196_070--Hb_009158_030 Hb_001047_010 Hb_001047_010 Hb_056196_070--Hb_001047_010 Hb_000184_040 Hb_000184_040 Hb_056196_070--Hb_000184_040 Hb_156144_010 Hb_156144_010 Hb_056196_070--Hb_156144_010 Hb_001832_160 Hb_001832_160 Hb_056196_070--Hb_001832_160 Hb_007741_040 Hb_007741_040 Hb_002835_220--Hb_007741_040 Hb_000567_280 Hb_000567_280 Hb_002835_220--Hb_000567_280 Hb_003777_230 Hb_003777_230 Hb_002835_220--Hb_003777_230 Hb_000005_030 Hb_000005_030 Hb_002835_220--Hb_000005_030 Hb_001631_080 Hb_001631_080 Hb_002835_220--Hb_001631_080 Hb_000526_020 Hb_000526_020 Hb_002835_220--Hb_000526_020 Hb_002821_010 Hb_002821_010 Hb_070820_010--Hb_002821_010 Hb_004098_030 Hb_004098_030 Hb_070820_010--Hb_004098_030 Hb_042404_010 Hb_042404_010 Hb_070820_010--Hb_042404_010 Hb_003398_060 Hb_003398_060 Hb_070820_010--Hb_003398_060 Hb_048197_010 Hb_048197_010 Hb_070820_010--Hb_048197_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
244.086 75.4056 14.4321 41.1449 143.021 290.809
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
911.9 230.615 28.757 154.03 4.81386

CAGE analysis