Hb_030765_010

Information

Type desease resistance
Description Gene Name: ABC_tran
Location Contig30765: 2177-3311
Sequence    

Annotation

kegg
ID sly:104647581
description ABC transporter G family member 11-like
nr
ID XP_010321480.1
description PREDICTED: ABC transporter G family member 11-like isoform X1 [Solanum lycopersicum]
swissprot
ID -
description -
trembl
ID K4C1I5
description Uncharacterized protein OS=Solanum lycopersicum GN=Solyc05g051540.1 PE=4 SV=1
Gene Ontology
ID GO:0016020
description abc transporter g family member 11-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32487: 2248-3253
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_030765_010 0.0 desease resistance Gene Name: ABC_tran PREDICTED: ABC transporter G family member 11-like isoform X1 [Solanum lycopersicum]
2 Hb_000048_100 0.1397175677 - - conserved hypothetical protein [Ricinus communis]
3 Hb_188382_010 0.1803118063 - - Ran GTPase binding protein, putative [Ricinus communis]
4 Hb_001186_050 0.200572867 - - -
5 Hb_000086_330 0.2119707724 - - PREDICTED: glutathione gamma-glutamylcysteinyltransferase 1 [Jatropha curcas]
6 Hb_000348_040 0.2146354802 - - -
7 Hb_000736_010 0.2148730786 - - PREDICTED: uncharacterized protein LOC105762083 [Gossypium raimondii]
8 Hb_004586_450 0.2164935423 - - -
9 Hb_000562_080 0.2201475294 - - conserved hypothetical protein [Ricinus communis]
10 Hb_145890_010 0.2209752057 - - unnamed protein product [Vitis vinifera]
11 Hb_002741_030 0.2214068706 - - -
12 Hb_004297_030 0.2265056637 - - PREDICTED: uncharacterized protein LOC105633198 [Jatropha curcas]
13 Hb_002233_110 0.2296044832 - - PREDICTED: nuclear transcription factor Y subunit B-3-like [Jatropha curcas]
14 Hb_002205_200 0.2312833399 - - PREDICTED: uncharacterized protein LOC105649174 [Jatropha curcas]
15 Hb_088496_010 0.2314146138 - - PREDICTED: uncharacterized protein LOC104889111 [Beta vulgaris subsp. vulgaris]
16 Hb_056768_010 0.2369795895 - - PREDICTED: serine/threonine-protein kinase HT1 isoform X1 [Cicer arietinum]
17 Hb_007574_060 0.2425894038 transcription factor TF Family: LOB PREDICTED: LOB domain-containing protein 27-like [Jatropha curcas]
18 Hb_001405_130 0.2475785248 - - PREDICTED: uncharacterized protein LOC102587892 [Solanum tuberosum]
19 Hb_006501_030 0.2477592592 - - hypothetical protein POPTR_0006s17720g [Populus trichocarpa]
20 Hb_005199_010 0.2487900846 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_030765_010 Hb_030765_010 Hb_000048_100 Hb_000048_100 Hb_030765_010--Hb_000048_100 Hb_188382_010 Hb_188382_010 Hb_030765_010--Hb_188382_010 Hb_001186_050 Hb_001186_050 Hb_030765_010--Hb_001186_050 Hb_000086_330 Hb_000086_330 Hb_030765_010--Hb_000086_330 Hb_000348_040 Hb_000348_040 Hb_030765_010--Hb_000348_040 Hb_000736_010 Hb_000736_010 Hb_030765_010--Hb_000736_010 Hb_004586_450 Hb_004586_450 Hb_000048_100--Hb_004586_450 Hb_000562_080 Hb_000562_080 Hb_000048_100--Hb_000562_080 Hb_007574_060 Hb_007574_060 Hb_000048_100--Hb_007574_060 Hb_056768_010 Hb_056768_010 Hb_000048_100--Hb_056768_010 Hb_000048_100--Hb_000348_040 Hb_015675_060 Hb_015675_060 Hb_188382_010--Hb_015675_060 Hb_039548_010 Hb_039548_010 Hb_188382_010--Hb_039548_010 Hb_002742_010 Hb_002742_010 Hb_188382_010--Hb_002742_010 Hb_029982_010 Hb_029982_010 Hb_188382_010--Hb_029982_010 Hb_188382_010--Hb_000562_080 Hb_002741_030 Hb_002741_030 Hb_001186_050--Hb_002741_030 Hb_010588_010 Hb_010588_010 Hb_001186_050--Hb_010588_010 Hb_145890_010 Hb_145890_010 Hb_001186_050--Hb_145890_010 Hb_000275_010 Hb_000275_010 Hb_001186_050--Hb_000275_010 Hb_000373_300 Hb_000373_300 Hb_001186_050--Hb_000373_300 Hb_070820_010 Hb_070820_010 Hb_000086_330--Hb_070820_010 Hb_000445_330 Hb_000445_330 Hb_000086_330--Hb_000445_330 Hb_002301_240 Hb_002301_240 Hb_000086_330--Hb_002301_240 Hb_001047_140 Hb_001047_140 Hb_000086_330--Hb_001047_140 Hb_004502_080 Hb_004502_080 Hb_000086_330--Hb_004502_080 Hb_006501_030 Hb_006501_030 Hb_000348_040--Hb_006501_030 Hb_004297_030 Hb_004297_030 Hb_000348_040--Hb_004297_030 Hb_015091_010 Hb_015091_010 Hb_000348_040--Hb_015091_010 Hb_063511_010 Hb_063511_010 Hb_000348_040--Hb_063511_010 Hb_088496_010 Hb_088496_010 Hb_000348_040--Hb_088496_010 Hb_039305_010 Hb_039305_010 Hb_000736_010--Hb_039305_010 Hb_148262_020 Hb_148262_020 Hb_000736_010--Hb_148262_020 Hb_159085_010 Hb_159085_010 Hb_000736_010--Hb_159085_010 Hb_000067_020 Hb_000067_020 Hb_000736_010--Hb_000067_020 Hb_002233_110 Hb_002233_110 Hb_000736_010--Hb_002233_110 Hb_005222_020 Hb_005222_020 Hb_000736_010--Hb_005222_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.42714 0.163473 0 0.0981484 0.36418 5.35143
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.82473 5.79734 0 0 0

CAGE analysis