Hb_039548_010

Information

Type -
Description -
Location Contig39548: 222-1327
Sequence    

Annotation

kegg
ID rcu:RCOM_1685970
description hypothetical protein
nr
ID XP_002509752.1
description hypothetical protein RCOM_1685970 [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RC68
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1685970 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_039548_010 0.0 - - hypothetical protein RCOM_1685970 [Ricinus communis]
2 Hb_005946_030 0.1422595349 - - ATP-binding cassette transporter, putative [Ricinus communis]
3 Hb_017436_010 0.1457542949 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
4 Hb_188382_010 0.1706688259 - - Ran GTPase binding protein, putative [Ricinus communis]
5 Hb_039305_010 0.2114084091 - - hypothetical protein JCGZ_18422 [Jatropha curcas]
6 Hb_004958_030 0.223223279 - - PREDICTED: uncharacterized protein LOC104904188 [Beta vulgaris subsp. vulgaris]
7 Hb_159085_010 0.2258709185 - - -
8 Hb_006501_030 0.229728189 - - hypothetical protein POPTR_0006s17720g [Populus trichocarpa]
9 Hb_000736_010 0.2307311953 - - PREDICTED: uncharacterized protein LOC105762083 [Gossypium raimondii]
10 Hb_000067_020 0.2376329945 desease resistance Gene Name: NB-ARC PREDICTED: inactive disease resistance protein RPS4-like [Jatropha curcas]
11 Hb_000562_080 0.2389450368 - - conserved hypothetical protein [Ricinus communis]
12 Hb_056768_010 0.242390069 - - PREDICTED: serine/threonine-protein kinase HT1 isoform X1 [Cicer arietinum]
13 Hb_030765_010 0.2596273837 desease resistance Gene Name: ABC_tran PREDICTED: ABC transporter G family member 11-like isoform X1 [Solanum lycopersicum]
14 Hb_007713_010 0.2610247708 - - hypothetical protein JCGZ_18011 [Jatropha curcas]
15 Hb_015675_060 0.2621489012 - - -
16 Hb_000329_530 0.2642647213 - - Uncharacterized protein TCM_038736 [Theobroma cacao]
17 Hb_000048_100 0.2655108135 - - conserved hypothetical protein [Ricinus communis]
18 Hb_029982_010 0.2670175024 - - hypothetical protein CICLE_v10006145mg [Citrus clementina]
19 Hb_002742_010 0.2700186056 - - PREDICTED: uncharacterized protein LOC104115978 [Nicotiana tomentosiformis]
20 Hb_008557_020 0.2704714666 - - PREDICTED: uncharacterized protein LOC105638665 [Jatropha curcas]

Gene co-expression network

sample Hb_039548_010 Hb_039548_010 Hb_005946_030 Hb_005946_030 Hb_039548_010--Hb_005946_030 Hb_017436_010 Hb_017436_010 Hb_039548_010--Hb_017436_010 Hb_188382_010 Hb_188382_010 Hb_039548_010--Hb_188382_010 Hb_039305_010 Hb_039305_010 Hb_039548_010--Hb_039305_010 Hb_004958_030 Hb_004958_030 Hb_039548_010--Hb_004958_030 Hb_159085_010 Hb_159085_010 Hb_039548_010--Hb_159085_010 Hb_005946_030--Hb_017436_010 Hb_006501_030 Hb_006501_030 Hb_005946_030--Hb_006501_030 Hb_005946_030--Hb_188382_010 Hb_000329_530 Hb_000329_530 Hb_005946_030--Hb_000329_530 Hb_056768_010 Hb_056768_010 Hb_005946_030--Hb_056768_010 Hb_017436_010--Hb_004958_030 Hb_017436_010--Hb_006501_030 Hb_017436_010--Hb_188382_010 Hb_000067_020 Hb_000067_020 Hb_017436_010--Hb_000067_020 Hb_015675_060 Hb_015675_060 Hb_188382_010--Hb_015675_060 Hb_030765_010 Hb_030765_010 Hb_188382_010--Hb_030765_010 Hb_002742_010 Hb_002742_010 Hb_188382_010--Hb_002742_010 Hb_029982_010 Hb_029982_010 Hb_188382_010--Hb_029982_010 Hb_000562_080 Hb_000562_080 Hb_188382_010--Hb_000562_080 Hb_039305_010--Hb_000067_020 Hb_000979_050 Hb_000979_050 Hb_039305_010--Hb_000979_050 Hb_000736_010 Hb_000736_010 Hb_039305_010--Hb_000736_010 Hb_008092_140 Hb_008092_140 Hb_039305_010--Hb_008092_140 Hb_003773_030 Hb_003773_030 Hb_039305_010--Hb_003773_030 Hb_039305_010--Hb_159085_010 Hb_004958_030--Hb_159085_010 Hb_003001_100 Hb_003001_100 Hb_004958_030--Hb_003001_100 Hb_002835_220 Hb_002835_220 Hb_004958_030--Hb_002835_220 Hb_004958_030--Hb_188382_010 Hb_159085_010--Hb_000736_010 Hb_159085_010--Hb_003773_030 Hb_001141_400 Hb_001141_400 Hb_159085_010--Hb_001141_400 Hb_000373_300 Hb_000373_300 Hb_159085_010--Hb_000373_300 Hb_159085_010--Hb_000067_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.714931 0.0642212 0 0 7.92458 9.42123
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
20.8147 14.9838 0 0.0174447 0.088153

CAGE analysis