Hb_006501_030

Information

Type -
Description -
Location Contig6501: 34421-35492
Sequence    

Annotation

kegg
ID pop:POPTR_0006s17720g
description hypothetical protein
nr
ID XP_006381757.1
description hypothetical protein POPTR_0006s17720g [Populus trichocarpa]
swissprot
ID Q3T0W4
description Protein phosphatase 1 regulatory subunit 7 OS=Bos taurus GN=PPP1R7 PE=1 SV=1
trembl
ID B9NAR9
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s17720g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52524: 35678-35964
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006501_030 0.0 - - hypothetical protein POPTR_0006s17720g [Populus trichocarpa]
2 Hb_000348_040 0.1446334375 - - -
3 Hb_015091_010 0.1905697813 - - PREDICTED: uncharacterized protein LOC104216022, partial [Nicotiana sylvestris]
4 Hb_063511_010 0.1952221 - - DNA-directed RNA polymerase II subunit RPB4 [Gossypium arboreum]
5 Hb_005946_030 0.1997362115 - - ATP-binding cassette transporter, putative [Ricinus communis]
6 Hb_000048_100 0.2075123967 - - conserved hypothetical protein [Ricinus communis]
7 Hb_001951_280 0.2125564377 - - -
8 Hb_004297_030 0.2146858589 - - PREDICTED: uncharacterized protein LOC105633198 [Jatropha curcas]
9 Hb_039548_010 0.229728189 - - hypothetical protein RCOM_1685970 [Ricinus communis]
10 Hb_088496_010 0.2307836831 - - PREDICTED: uncharacterized protein LOC104889111 [Beta vulgaris subsp. vulgaris]
11 Hb_017436_010 0.2410185763 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
12 Hb_056768_010 0.2411209275 - - PREDICTED: serine/threonine-protein kinase HT1 isoform X1 [Cicer arietinum]
13 Hb_030765_010 0.2477592592 desease resistance Gene Name: ABC_tran PREDICTED: ABC transporter G family member 11-like isoform X1 [Solanum lycopersicum]
14 Hb_126398_010 0.2498890061 - - -
15 Hb_000563_270 0.2509121751 - - -
16 Hb_188382_010 0.2555580359 - - Ran GTPase binding protein, putative [Ricinus communis]
17 Hb_003702_050 0.2643298338 - - PREDICTED: uncharacterized protein LOC105649649 [Jatropha curcas]
18 Hb_162999_010 0.264747437 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
19 Hb_094721_010 0.2657523466 - - PREDICTED: uncharacterized protein LOC104809818, partial [Tarenaya hassleriana]
20 Hb_004586_450 0.2665094071 - - -

Gene co-expression network

sample Hb_006501_030 Hb_006501_030 Hb_000348_040 Hb_000348_040 Hb_006501_030--Hb_000348_040 Hb_015091_010 Hb_015091_010 Hb_006501_030--Hb_015091_010 Hb_063511_010 Hb_063511_010 Hb_006501_030--Hb_063511_010 Hb_005946_030 Hb_005946_030 Hb_006501_030--Hb_005946_030 Hb_000048_100 Hb_000048_100 Hb_006501_030--Hb_000048_100 Hb_001951_280 Hb_001951_280 Hb_006501_030--Hb_001951_280 Hb_004297_030 Hb_004297_030 Hb_000348_040--Hb_004297_030 Hb_000348_040--Hb_015091_010 Hb_000348_040--Hb_063511_010 Hb_088496_010 Hb_088496_010 Hb_000348_040--Hb_088496_010 Hb_000348_040--Hb_000048_100 Hb_015091_010--Hb_063511_010 Hb_015091_010--Hb_001951_280 Hb_015091_010--Hb_004297_030 Hb_015091_010--Hb_088496_010 Hb_063511_010--Hb_001951_280 Hb_169488_010 Hb_169488_010 Hb_063511_010--Hb_169488_010 Hb_003702_050 Hb_003702_050 Hb_063511_010--Hb_003702_050 Hb_039548_010 Hb_039548_010 Hb_005946_030--Hb_039548_010 Hb_017436_010 Hb_017436_010 Hb_005946_030--Hb_017436_010 Hb_188382_010 Hb_188382_010 Hb_005946_030--Hb_188382_010 Hb_000329_530 Hb_000329_530 Hb_005946_030--Hb_000329_530 Hb_056768_010 Hb_056768_010 Hb_005946_030--Hb_056768_010 Hb_030765_010 Hb_030765_010 Hb_000048_100--Hb_030765_010 Hb_004586_450 Hb_004586_450 Hb_000048_100--Hb_004586_450 Hb_000562_080 Hb_000562_080 Hb_000048_100--Hb_000562_080 Hb_007574_060 Hb_007574_060 Hb_000048_100--Hb_007574_060 Hb_000048_100--Hb_056768_010 Hb_001951_280--Hb_169488_010 Hb_001951_280--Hb_003702_050 Hb_001951_280--Hb_000348_040 Hb_005063_070 Hb_005063_070 Hb_001951_280--Hb_005063_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0.0449692 0.270703
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.207614 0.24474 0 0 0

CAGE analysis