Hb_001951_280

Information

Type -
Description -
Location Contig1951: 238635-239521
Sequence    

Annotation

kegg
ID tup:102481051
description CHRNA3; cholinergic receptor, nicotinic, alpha 3 (neuronal)
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID GO:0005840
description 60s ribosomal protein l32-1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 022_A24.ab1: 225731-239489

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001951_280 0.0 - - -
2 Hb_063511_010 0.0756935864 - - DNA-directed RNA polymerase II subunit RPB4 [Gossypium arboreum]
3 Hb_015091_010 0.1268898807 - - PREDICTED: uncharacterized protein LOC104216022, partial [Nicotiana sylvestris]
4 Hb_169488_010 0.1598837584 - - PREDICTED: choline monooxygenase, chloroplastic-like [Populus euphratica]
5 Hb_003702_050 0.1790566767 - - PREDICTED: uncharacterized protein LOC105649649 [Jatropha curcas]
6 Hb_000348_040 0.2021831213 - - -
7 Hb_005063_070 0.2044351383 - - PREDICTED: PRA1 family protein E [Jatropha curcas]
8 Hb_006501_030 0.2125564377 - - hypothetical protein POPTR_0006s17720g [Populus trichocarpa]
9 Hb_004297_030 0.2505727698 - - PREDICTED: uncharacterized protein LOC105633198 [Jatropha curcas]
10 Hb_157340_010 0.251131919 - - hypothetical protein CISIN_1g0109951mg, partial [Citrus sinensis]
11 Hb_126398_010 0.2623890557 - - -
12 Hb_005595_020 0.2657700585 - - -
13 Hb_000563_270 0.2712909648 - - -
14 Hb_088496_010 0.2773131216 - - PREDICTED: uncharacterized protein LOC104889111 [Beta vulgaris subsp. vulgaris]
15 Hb_001544_020 0.2804573535 - - -
16 Hb_000048_100 0.2816842737 - - conserved hypothetical protein [Ricinus communis]
17 Hb_007574_060 0.2836380644 transcription factor TF Family: LOB PREDICTED: LOB domain-containing protein 27-like [Jatropha curcas]
18 Hb_001981_080 0.2908546402 - - PREDICTED: mitochondrial tRNA-specific 2-thiouridylase 1 isoform X4 [Musa acuminata subsp. malaccensis]
19 Hb_036285_010 0.2937938593 - - -
20 Hb_000832_240 0.295397756 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_001951_280 Hb_001951_280 Hb_063511_010 Hb_063511_010 Hb_001951_280--Hb_063511_010 Hb_015091_010 Hb_015091_010 Hb_001951_280--Hb_015091_010 Hb_169488_010 Hb_169488_010 Hb_001951_280--Hb_169488_010 Hb_003702_050 Hb_003702_050 Hb_001951_280--Hb_003702_050 Hb_000348_040 Hb_000348_040 Hb_001951_280--Hb_000348_040 Hb_005063_070 Hb_005063_070 Hb_001951_280--Hb_005063_070 Hb_063511_010--Hb_015091_010 Hb_063511_010--Hb_169488_010 Hb_063511_010--Hb_003702_050 Hb_063511_010--Hb_000348_040 Hb_006501_030 Hb_006501_030 Hb_063511_010--Hb_006501_030 Hb_004297_030 Hb_004297_030 Hb_015091_010--Hb_004297_030 Hb_015091_010--Hb_000348_040 Hb_088496_010 Hb_088496_010 Hb_015091_010--Hb_088496_010 Hb_015091_010--Hb_006501_030 Hb_169488_010--Hb_003702_050 Hb_001544_020 Hb_001544_020 Hb_169488_010--Hb_001544_020 Hb_169488_010--Hb_015091_010 Hb_000003_690 Hb_000003_690 Hb_169488_010--Hb_000003_690 Hb_003702_050--Hb_000003_690 Hb_126398_010 Hb_126398_010 Hb_003702_050--Hb_126398_010 Hb_003702_050--Hb_015091_010 Hb_000348_040--Hb_006501_030 Hb_000348_040--Hb_004297_030 Hb_000348_040--Hb_088496_010 Hb_000048_100 Hb_000048_100 Hb_000348_040--Hb_000048_100 Hb_005063_070--Hb_063511_010 Hb_157340_010 Hb_157340_010 Hb_005063_070--Hb_157340_010 Hb_000107_640 Hb_000107_640 Hb_005063_070--Hb_000107_640 Hb_005063_070--Hb_015091_010 Hb_005063_070--Hb_000348_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0.530992
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.197382 0.310075 0 0 0

CAGE analysis