Hb_126398_010

Information

Type -
Description -
Location Contig126398: 1763-3889
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_126398_010 0.0 - - -
2 Hb_162999_010 0.1651268344 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
3 Hb_001981_080 0.1747853109 - - PREDICTED: mitochondrial tRNA-specific 2-thiouridylase 1 isoform X4 [Musa acuminata subsp. malaccensis]
4 Hb_003702_050 0.1898664498 - - PREDICTED: uncharacterized protein LOC105649649 [Jatropha curcas]
5 Hb_135403_010 0.1968353304 - - HEV1.1 [Hevea brasiliensis]
6 Hb_000048_090 0.2011517208 transcription factor TF Family: SET hypothetical protein JCGZ_06559 [Jatropha curcas]
7 Hb_002153_010 0.2234365971 - - hypothetical protein B456_002G103400 [Gossypium raimondii]
8 Hb_000003_690 0.2237925144 - - -
9 Hb_001488_110 0.2247855095 - - -
10 Hb_061581_010 0.2372187794 desease resistance Gene Name: ABC_tran ABC transporter family protein [Hevea brasiliensis]
11 Hb_000048_100 0.2386030376 - - conserved hypothetical protein [Ricinus communis]
12 Hb_169488_010 0.2389360282 - - PREDICTED: choline monooxygenase, chloroplastic-like [Populus euphratica]
13 Hb_002188_100 0.241169758 - - conserved hypothetical protein [Ricinus communis]
14 Hb_001544_020 0.2472210305 - - -
15 Hb_006501_030 0.2498890061 - - hypothetical protein POPTR_0006s17720g [Populus trichocarpa]
16 Hb_121550_010 0.2606144476 - - conserved hypothetical protein [Ricinus communis]
17 Hb_001951_280 0.2623890557 - - -
18 Hb_000832_240 0.2654957687 - - conserved hypothetical protein [Ricinus communis]
19 Hb_063511_010 0.2674916148 - - DNA-directed RNA polymerase II subunit RPB4 [Gossypium arboreum]
20 Hb_115919_010 0.267615739 - - unknown [Lotus japonicus]

Gene co-expression network

sample Hb_126398_010 Hb_126398_010 Hb_162999_010 Hb_162999_010 Hb_126398_010--Hb_162999_010 Hb_001981_080 Hb_001981_080 Hb_126398_010--Hb_001981_080 Hb_003702_050 Hb_003702_050 Hb_126398_010--Hb_003702_050 Hb_135403_010 Hb_135403_010 Hb_126398_010--Hb_135403_010 Hb_000048_090 Hb_000048_090 Hb_126398_010--Hb_000048_090 Hb_002153_010 Hb_002153_010 Hb_126398_010--Hb_002153_010 Hb_162999_010--Hb_000048_090 Hb_162999_010--Hb_002153_010 Hb_001488_110 Hb_001488_110 Hb_162999_010--Hb_001488_110 Hb_174107_010 Hb_174107_010 Hb_162999_010--Hb_174107_010 Hb_002188_100 Hb_002188_100 Hb_162999_010--Hb_002188_100 Hb_145827_010 Hb_145827_010 Hb_001981_080--Hb_145827_010 Hb_001544_020 Hb_001544_020 Hb_001981_080--Hb_001544_020 Hb_036285_010 Hb_036285_010 Hb_001981_080--Hb_036285_010 Hb_001981_080--Hb_003702_050 Hb_000003_690 Hb_000003_690 Hb_001981_080--Hb_000003_690 Hb_169488_010 Hb_169488_010 Hb_003702_050--Hb_169488_010 Hb_063511_010 Hb_063511_010 Hb_003702_050--Hb_063511_010 Hb_001951_280 Hb_001951_280 Hb_003702_050--Hb_001951_280 Hb_003702_050--Hb_000003_690 Hb_015091_010 Hb_015091_010 Hb_003702_050--Hb_015091_010 Hb_061581_010 Hb_061581_010 Hb_135403_010--Hb_061581_010 Hb_121236_010 Hb_121236_010 Hb_135403_010--Hb_121236_010 Hb_135403_010--Hb_001488_110 Hb_001095_060 Hb_001095_060 Hb_135403_010--Hb_001095_060 Hb_000122_030 Hb_000122_030 Hb_135403_010--Hb_000122_030 Hb_115919_010 Hb_115919_010 Hb_135403_010--Hb_115919_010 Hb_004025_030 Hb_004025_030 Hb_000048_090--Hb_004025_030 Hb_004502_050 Hb_004502_050 Hb_000048_090--Hb_004502_050 Hb_000048_100 Hb_000048_100 Hb_000048_090--Hb_000048_100 Hb_000048_090--Hb_002153_010 Hb_002153_010--Hb_174107_010 Hb_002153_010--Hb_001488_110 Hb_002153_010--Hb_002188_100 Hb_077562_040 Hb_077562_040 Hb_002153_010--Hb_077562_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.351974 0 0 0 0.709444 5.59461
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.66361 1.63981 0 0 0

CAGE analysis