Hb_063511_010

Information

Type -
Description -
Location Contig63511: 2449-3610
Sequence    

Annotation

kegg
ID brp:103828417
description DNA-directed RNA polymerase II subunit 4-like
nr
ID KHG11711.1
description DNA-directed RNA polymerase II subunit RPB4 [Gossypium arboreum]
swissprot
ID O48890
description DNA-directed RNA polymerase II subunit 4 OS=Arabidopsis thaliana GN=NRPB4 PE=1 SV=1
trembl
ID A0A0B0NKV0
description DNA-directed RNA polymerase II subunit RPB4 OS=Gossypium arboreum GN=F383_13399 PE=4 SV=1
Gene Ontology
ID GO:0005665
description dna-directed rna polymerase ii subunit 4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_063511_010 0.0 - - DNA-directed RNA polymerase II subunit RPB4 [Gossypium arboreum]
2 Hb_015091_010 0.0537887722 - - PREDICTED: uncharacterized protein LOC104216022, partial [Nicotiana sylvestris]
3 Hb_001951_280 0.0756935864 - - -
4 Hb_169488_010 0.169271495 - - PREDICTED: choline monooxygenase, chloroplastic-like [Populus euphratica]
5 Hb_003702_050 0.1777829905 - - PREDICTED: uncharacterized protein LOC105649649 [Jatropha curcas]
6 Hb_000348_040 0.1820369055 - - -
7 Hb_006501_030 0.1952221 - - hypothetical protein POPTR_0006s17720g [Populus trichocarpa]
8 Hb_004297_030 0.198384105 - - PREDICTED: uncharacterized protein LOC105633198 [Jatropha curcas]
9 Hb_005063_070 0.2265787134 - - PREDICTED: PRA1 family protein E [Jatropha curcas]
10 Hb_088496_010 0.2272893498 - - PREDICTED: uncharacterized protein LOC104889111 [Beta vulgaris subsp. vulgaris]
11 Hb_000563_270 0.2476531835 - - -
12 Hb_003116_020 0.2545367599 - - PREDICTED: uncharacterized protein LOC105793230 [Gossypium raimondii]
13 Hb_000048_100 0.2567831824 - - conserved hypothetical protein [Ricinus communis]
14 Hb_126398_010 0.2674916148 - - -
15 Hb_157340_010 0.2749639676 - - hypothetical protein CISIN_1g0109951mg, partial [Citrus sinensis]
16 Hb_001544_020 0.2799898075 - - -
17 Hb_030765_010 0.2833837249 desease resistance Gene Name: ABC_tran PREDICTED: ABC transporter G family member 11-like isoform X1 [Solanum lycopersicum]
18 Hb_005595_020 0.2888835835 - - -
19 Hb_094721_010 0.2942089579 - - PREDICTED: uncharacterized protein LOC104809818, partial [Tarenaya hassleriana]
20 Hb_007574_060 0.2960618128 transcription factor TF Family: LOB PREDICTED: LOB domain-containing protein 27-like [Jatropha curcas]

Gene co-expression network

sample Hb_063511_010 Hb_063511_010 Hb_015091_010 Hb_015091_010 Hb_063511_010--Hb_015091_010 Hb_001951_280 Hb_001951_280 Hb_063511_010--Hb_001951_280 Hb_169488_010 Hb_169488_010 Hb_063511_010--Hb_169488_010 Hb_003702_050 Hb_003702_050 Hb_063511_010--Hb_003702_050 Hb_000348_040 Hb_000348_040 Hb_063511_010--Hb_000348_040 Hb_006501_030 Hb_006501_030 Hb_063511_010--Hb_006501_030 Hb_015091_010--Hb_001951_280 Hb_004297_030 Hb_004297_030 Hb_015091_010--Hb_004297_030 Hb_015091_010--Hb_000348_040 Hb_088496_010 Hb_088496_010 Hb_015091_010--Hb_088496_010 Hb_015091_010--Hb_006501_030 Hb_001951_280--Hb_169488_010 Hb_001951_280--Hb_003702_050 Hb_001951_280--Hb_000348_040 Hb_005063_070 Hb_005063_070 Hb_001951_280--Hb_005063_070 Hb_169488_010--Hb_003702_050 Hb_001544_020 Hb_001544_020 Hb_169488_010--Hb_001544_020 Hb_169488_010--Hb_015091_010 Hb_000003_690 Hb_000003_690 Hb_169488_010--Hb_000003_690 Hb_003702_050--Hb_000003_690 Hb_126398_010 Hb_126398_010 Hb_003702_050--Hb_126398_010 Hb_003702_050--Hb_015091_010 Hb_000348_040--Hb_006501_030 Hb_000348_040--Hb_004297_030 Hb_000348_040--Hb_088496_010 Hb_000048_100 Hb_000048_100 Hb_000348_040--Hb_000048_100 Hb_005946_030 Hb_005946_030 Hb_006501_030--Hb_005946_030 Hb_006501_030--Hb_000048_100 Hb_006501_030--Hb_001951_280
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 3.33748
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.84849 1.82441 0 0 0

CAGE analysis