Hb_005946_030

Information

Type -
Description -
Location Contig5946: 16225-24444
Sequence    

Annotation

kegg
ID rcu:RCOM_1053730
description ATP-binding cassette transporter, putative (EC:3.6.3.28 3.6.3.31)
nr
ID XP_002514350.1
description ATP-binding cassette transporter, putative [Ricinus communis]
swissprot
ID Q0JLC5
description Pleiotropic drug resistance protein 3 OS=Oryza sativa subsp. japonica GN=PDR3 PE=2 SV=1
trembl
ID B9RJZ6
description ATP-binding cassette transporter, putative OS=Ricinus communis GN=RCOM_1053730 PE=4 SV=1
Gene Ontology
ID GO:0016020
description atp-binding cassette

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005946_030 0.0 - - ATP-binding cassette transporter, putative [Ricinus communis]
2 Hb_039548_010 0.1422595349 - - hypothetical protein RCOM_1685970 [Ricinus communis]
3 Hb_017436_010 0.177838137 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
4 Hb_006501_030 0.1997362115 - - hypothetical protein POPTR_0006s17720g [Populus trichocarpa]
5 Hb_188382_010 0.2372853085 - - Ran GTPase binding protein, putative [Ricinus communis]
6 Hb_000329_530 0.2632626001 - - Uncharacterized protein TCM_038736 [Theobroma cacao]
7 Hb_056768_010 0.274868465 - - PREDICTED: serine/threonine-protein kinase HT1 isoform X1 [Cicer arietinum]
8 Hb_004958_030 0.2797664233 - - PREDICTED: uncharacterized protein LOC104904188 [Beta vulgaris subsp. vulgaris]
9 Hb_162999_010 0.284535462 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
10 Hb_000562_080 0.2889196214 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000048_100 0.2915932933 - - conserved hypothetical protein [Ricinus communis]
12 Hb_001792_080 0.2958883512 - - unknown [Populus trichocarpa]
13 Hb_000348_040 0.2986927468 - - -
14 Hb_029982_010 0.3000795191 - - hypothetical protein CICLE_v10006145mg [Citrus clementina]
15 Hb_000048_090 0.3027647117 transcription factor TF Family: SET hypothetical protein JCGZ_06559 [Jatropha curcas]
16 Hb_002188_100 0.309182665 - - conserved hypothetical protein [Ricinus communis]
17 Hb_015675_060 0.3097375017 - - -
18 Hb_002890_260 0.310689941 - - -
19 Hb_039305_010 0.3112843143 - - hypothetical protein JCGZ_18422 [Jatropha curcas]
20 Hb_004025_030 0.3156950324 - - -

Gene co-expression network

sample Hb_005946_030 Hb_005946_030 Hb_039548_010 Hb_039548_010 Hb_005946_030--Hb_039548_010 Hb_017436_010 Hb_017436_010 Hb_005946_030--Hb_017436_010 Hb_006501_030 Hb_006501_030 Hb_005946_030--Hb_006501_030 Hb_188382_010 Hb_188382_010 Hb_005946_030--Hb_188382_010 Hb_000329_530 Hb_000329_530 Hb_005946_030--Hb_000329_530 Hb_056768_010 Hb_056768_010 Hb_005946_030--Hb_056768_010 Hb_039548_010--Hb_017436_010 Hb_039548_010--Hb_188382_010 Hb_039305_010 Hb_039305_010 Hb_039548_010--Hb_039305_010 Hb_004958_030 Hb_004958_030 Hb_039548_010--Hb_004958_030 Hb_159085_010 Hb_159085_010 Hb_039548_010--Hb_159085_010 Hb_017436_010--Hb_004958_030 Hb_017436_010--Hb_006501_030 Hb_017436_010--Hb_188382_010 Hb_000067_020 Hb_000067_020 Hb_017436_010--Hb_000067_020 Hb_000348_040 Hb_000348_040 Hb_006501_030--Hb_000348_040 Hb_015091_010 Hb_015091_010 Hb_006501_030--Hb_015091_010 Hb_063511_010 Hb_063511_010 Hb_006501_030--Hb_063511_010 Hb_000048_100 Hb_000048_100 Hb_006501_030--Hb_000048_100 Hb_001951_280 Hb_001951_280 Hb_006501_030--Hb_001951_280 Hb_015675_060 Hb_015675_060 Hb_188382_010--Hb_015675_060 Hb_030765_010 Hb_030765_010 Hb_188382_010--Hb_030765_010 Hb_002742_010 Hb_002742_010 Hb_188382_010--Hb_002742_010 Hb_029982_010 Hb_029982_010 Hb_188382_010--Hb_029982_010 Hb_000562_080 Hb_000562_080 Hb_188382_010--Hb_000562_080 Hb_001741_050 Hb_001741_050 Hb_000329_530--Hb_001741_050 Hb_000329_530--Hb_002742_010 Hb_004449_010 Hb_004449_010 Hb_000329_530--Hb_004449_010 Hb_002188_100 Hb_002188_100 Hb_000329_530--Hb_002188_100 Hb_000329_530--Hb_188382_010 Hb_162999_010 Hb_162999_010 Hb_000329_530--Hb_162999_010 Hb_004586_450 Hb_004586_450 Hb_056768_010--Hb_004586_450 Hb_056768_010--Hb_000048_100 Hb_056768_010--Hb_029982_010 Hb_008667_050 Hb_008667_050 Hb_056768_010--Hb_008667_050 Hb_078604_010 Hb_078604_010 Hb_056768_010--Hb_078604_010 Hb_005690_020 Hb_005690_020 Hb_056768_010--Hb_005690_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0.0197984 0.0250775
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0305711 0.0240569 0 0 0

CAGE analysis