Hb_078604_010

Information

Type -
Description -
Location Contig78604: 4234-4914
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_078604_010 0.0 - - -
2 Hb_015401_010 0.170982814 - - hypothetical protein VITISV_001548 [Vitis vinifera]
3 Hb_012532_030 0.1914023012 - - -
4 Hb_086859_010 0.2212696434 - - -
5 Hb_056768_010 0.2238334705 - - PREDICTED: serine/threonine-protein kinase HT1 isoform X1 [Cicer arietinum]
6 Hb_029982_010 0.2381516915 - - hypothetical protein CICLE_v10006145mg [Citrus clementina]
7 Hb_004502_080 0.247008063 - - hypothetical protein JCGZ_23578 [Jatropha curcas]
8 Hb_133311_010 0.2502017162 - - PREDICTED: U-box domain-containing protein 62-like isoform X1 [Glycine max]
9 Hb_029888_020 0.2532969924 - - hypothetical protein PHAVU_007G268100g [Phaseolus vulgaris]
10 Hb_127008_010 0.2566674385 - - PREDICTED: uncharacterized protein LOC105629501 [Jatropha curcas]
11 Hb_002045_140 0.2593693525 - - histone acetyltransferase, partial [Triticum aestivum]
12 Hb_007574_060 0.2614458597 transcription factor TF Family: LOB PREDICTED: LOB domain-containing protein 27-like [Jatropha curcas]
13 Hb_171529_010 0.2631828877 - - -
14 Hb_000179_150 0.2638606907 - - hypothetical protein ZEAMMB73_153699 [Zea mays]
15 Hb_004048_010 0.2639376357 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570-like [Citrus sinensis]
16 Hb_007765_120 0.2662184767 - - glycogen phosphorylase, putative [Ricinus communis]
17 Hb_001405_130 0.2700346459 - - PREDICTED: uncharacterized protein LOC102587892 [Solanum tuberosum]
18 Hb_012135_010 0.2715157029 - - PREDICTED: uncharacterized protein LOC105800880, partial [Gossypium raimondii]
19 Hb_004586_450 0.2734303857 - - -
20 Hb_011161_070 0.2737510684 - - PREDICTED: kynurenine--oxoglutarate transaminase 1-like isoform X1 [Populus euphratica]

Gene co-expression network

sample Hb_078604_010 Hb_078604_010 Hb_015401_010 Hb_015401_010 Hb_078604_010--Hb_015401_010 Hb_012532_030 Hb_012532_030 Hb_078604_010--Hb_012532_030 Hb_086859_010 Hb_086859_010 Hb_078604_010--Hb_086859_010 Hb_056768_010 Hb_056768_010 Hb_078604_010--Hb_056768_010 Hb_029982_010 Hb_029982_010 Hb_078604_010--Hb_029982_010 Hb_004502_080 Hb_004502_080 Hb_078604_010--Hb_004502_080 Hb_015401_010--Hb_012532_030 Hb_001405_130 Hb_001405_130 Hb_015401_010--Hb_001405_130 Hb_015401_010--Hb_056768_010 Hb_000348_040 Hb_000348_040 Hb_015401_010--Hb_000348_040 Hb_007574_060 Hb_007574_060 Hb_015401_010--Hb_007574_060 Hb_008442_010 Hb_008442_010 Hb_012532_030--Hb_008442_010 Hb_004374_180 Hb_004374_180 Hb_012532_030--Hb_004374_180 Hb_012532_030--Hb_001405_130 Hb_013492_010 Hb_013492_010 Hb_012532_030--Hb_013492_010 Hb_086859_010--Hb_029982_010 Hb_011161_070 Hb_011161_070 Hb_086859_010--Hb_011161_070 Hb_142522_010 Hb_142522_010 Hb_086859_010--Hb_142522_010 Hb_042404_010 Hb_042404_010 Hb_086859_010--Hb_042404_010 Hb_000221_100 Hb_000221_100 Hb_086859_010--Hb_000221_100 Hb_000329_530 Hb_000329_530 Hb_086859_010--Hb_000329_530 Hb_004586_450 Hb_004586_450 Hb_056768_010--Hb_004586_450 Hb_000048_100 Hb_000048_100 Hb_056768_010--Hb_000048_100 Hb_056768_010--Hb_029982_010 Hb_008667_050 Hb_008667_050 Hb_056768_010--Hb_008667_050 Hb_005690_020 Hb_005690_020 Hb_056768_010--Hb_005690_020 Hb_029982_010--Hb_042404_010 Hb_188382_010 Hb_188382_010 Hb_029982_010--Hb_188382_010 Hb_004048_010 Hb_004048_010 Hb_029982_010--Hb_004048_010 Hb_029982_010--Hb_001405_130 Hb_029982_010--Hb_142522_010 Hb_000175_040 Hb_000175_040 Hb_004502_080--Hb_000175_040 Hb_029888_020 Hb_029888_020 Hb_004502_080--Hb_029888_020 Hb_003057_050 Hb_003057_050 Hb_004502_080--Hb_003057_050 Hb_003057_130 Hb_003057_130 Hb_004502_080--Hb_003057_130 Hb_019033_010 Hb_019033_010 Hb_004502_080--Hb_019033_010 Hb_025246_010 Hb_025246_010 Hb_004502_080--Hb_025246_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.4453 2.04518 4.27663 0 2.0859 8.0527
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.5604 13.1939 0 0 0

CAGE analysis