Hb_004374_180

Information

Type -
Description -
Location Contig4374: 152761-154867
Sequence    

Annotation

kegg
ID rcu:RCOM_1247670
description GMP synthase, putative
nr
ID XP_002527733.1
description GMP synthase, putative [Ricinus communis]
swissprot
ID A6LKY1
description GMP synthase [glutamine-hydrolyzing] OS=Thermosipho melanesiensis (strain BI429 / DSM 12029) GN=guaA PE=3 SV=1
trembl
ID B9SP14
description GMP synthase, putative OS=Ricinus communis GN=RCOM_1247670 PE=4 SV=1
Gene Ontology
ID GO:0005829
description gmp synthase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004374_180 0.0 - - GMP synthase, putative [Ricinus communis]
2 Hb_012532_030 0.2220336842 - - -
3 Hb_068922_010 0.2376472156 - - hypothetical protein POPTR_0005s17480g [Populus trichocarpa]
4 Hb_013492_010 0.2459455274 - - PREDICTED: uncharacterized protein LOC105640364 [Jatropha curcas]
5 Hb_000959_310 0.246747693 - - PREDICTED: WD repeat domain-containing protein 83 [Jatropha curcas]
6 Hb_010068_100 0.2469220878 - - PREDICTED: reactive Intermediate Deaminase A, chloroplastic [Jatropha curcas]
7 Hb_002228_100 0.2475337614 - - calcineurin-like phosphoesterase [Manihot esculenta]
8 Hb_009393_190 0.2587063235 - - PREDICTED: E3 ubiquitin-protein ligase AIP2-like [Jatropha curcas]
9 Hb_168326_010 0.2660723386 - - PREDICTED: alpha-L-fucosidase 2-like isoform X2 [Populus euphratica]
10 Hb_000108_100 0.266120747 - - PREDICTED: DNA polymerase epsilon subunit 2 isoform X2 [Jatropha curcas]
11 Hb_000099_230 0.271606557 - - PREDICTED: F-box protein SKIP19-like [Gossypium raimondii]
12 Hb_003750_070 0.2720283595 - - PREDICTED: psbQ-like protein 3, chloroplastic [Jatropha curcas]
13 Hb_032974_010 0.2853193468 - - -
14 Hb_003371_180 0.2946334972 - - -
15 Hb_100743_010 0.2959368084 - - hypothetical protein JCGZ_17104 [Jatropha curcas]
16 Hb_000046_490 0.29654742 - - PREDICTED: uncharacterized protein LOC105646185 [Jatropha curcas]
17 Hb_000092_130 0.297399928 - - PREDICTED: enoyl-[acyl-carrier-protein] reductase [NADH], chloroplastic-like [Jatropha curcas]
18 Hb_000010_210 0.2991553843 - - PREDICTED: centromere protein X [Jatropha curcas]
19 Hb_004846_100 0.3005034411 - - Na(+)/H(+) antiporter, putative [Ricinus communis]
20 Hb_001519_180 0.3013014365 - - Squalene monooxygenase, putative [Ricinus communis]

Gene co-expression network

sample Hb_004374_180 Hb_004374_180 Hb_012532_030 Hb_012532_030 Hb_004374_180--Hb_012532_030 Hb_068922_010 Hb_068922_010 Hb_004374_180--Hb_068922_010 Hb_013492_010 Hb_013492_010 Hb_004374_180--Hb_013492_010 Hb_000959_310 Hb_000959_310 Hb_004374_180--Hb_000959_310 Hb_010068_100 Hb_010068_100 Hb_004374_180--Hb_010068_100 Hb_002228_100 Hb_002228_100 Hb_004374_180--Hb_002228_100 Hb_078604_010 Hb_078604_010 Hb_012532_030--Hb_078604_010 Hb_008442_010 Hb_008442_010 Hb_012532_030--Hb_008442_010 Hb_015401_010 Hb_015401_010 Hb_012532_030--Hb_015401_010 Hb_001405_130 Hb_001405_130 Hb_012532_030--Hb_001405_130 Hb_012532_030--Hb_013492_010 Hb_136765_010 Hb_136765_010 Hb_068922_010--Hb_136765_010 Hb_012867_010 Hb_012867_010 Hb_068922_010--Hb_012867_010 Hb_068922_010--Hb_010068_100 Hb_012120_030 Hb_012120_030 Hb_068922_010--Hb_012120_030 Hb_000253_030 Hb_000253_030 Hb_068922_010--Hb_000253_030 Hb_005271_020 Hb_005271_020 Hb_068922_010--Hb_005271_020 Hb_082407_010 Hb_082407_010 Hb_013492_010--Hb_082407_010 Hb_163599_010 Hb_163599_010 Hb_013492_010--Hb_163599_010 Hb_003405_060 Hb_003405_060 Hb_013492_010--Hb_003405_060 Hb_013492_010--Hb_001405_130 Hb_013492_010--Hb_008442_010 Hb_014834_140 Hb_014834_140 Hb_013492_010--Hb_014834_140 Hb_001799_110 Hb_001799_110 Hb_000959_310--Hb_001799_110 Hb_000959_310--Hb_012120_030 Hb_114336_030 Hb_114336_030 Hb_000959_310--Hb_114336_030 Hb_004931_080 Hb_004931_080 Hb_000959_310--Hb_004931_080 Hb_188209_010 Hb_188209_010 Hb_000959_310--Hb_188209_010 Hb_003750_070 Hb_003750_070 Hb_000959_310--Hb_003750_070 Hb_010068_100--Hb_000253_030 Hb_010068_100--Hb_136765_010 Hb_006541_090 Hb_006541_090 Hb_010068_100--Hb_006541_090 Hb_010068_100--Hb_082407_010 Hb_008667_040 Hb_008667_040 Hb_010068_100--Hb_008667_040 Hb_000445_170 Hb_000445_170 Hb_002228_100--Hb_000445_170 Hb_000137_070 Hb_000137_070 Hb_002228_100--Hb_000137_070 Hb_000243_040 Hb_000243_040 Hb_002228_100--Hb_000243_040 Hb_002228_100--Hb_013492_010 Hb_002228_100--Hb_010068_100 Hb_002228_100--Hb_005271_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.32422 0 0.666222 0.522821 0.308028 0.432847
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.28865 0.746612 0 0 0

CAGE analysis