Hb_006541_090

Information

Type -
Description -
Location Contig6541: 86830-90305
Sequence    

Annotation

kegg
ID tcc:TCM_045040
description Copia-like retrotransposable element, putative
nr
ID CAN71759.1
description hypothetical protein VITISV_020777 [Vitis vinifera]
swissprot
ID P10978
description Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum PE=2 SV=1
trembl
ID A5AWP3
description Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_020777 PE=4 SV=1
Gene Ontology
ID GO:0003676
description retrotransposon unclassified

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52637: 88372-88524
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006541_090 0.0 - - hypothetical protein VITISV_020777 [Vitis vinifera]
2 Hb_010068_100 0.1990828538 - - PREDICTED: reactive Intermediate Deaminase A, chloroplastic [Jatropha curcas]
3 Hb_103790_010 0.2225056369 - - PREDICTED: pre-mRNA-processing protein 40A isoform X4 [Jatropha curcas]
4 Hb_136765_010 0.2229797603 - - PREDICTED: phosphatidylinositol glycan anchor biosynthesis class U protein-like isoform X2 [Jatropha curcas]
5 Hb_000253_030 0.2332324745 - - hypothetical protein JCGZ_23039 [Jatropha curcas]
6 Hb_068922_010 0.255931503 - - hypothetical protein POPTR_0005s17480g [Populus trichocarpa]
7 Hb_000327_290 0.2561172118 - - Histone H4 [Triticum urartu]
8 Hb_002141_020 0.2567830093 - - PREDICTED: probable E3 ubiquitin-protein ligase RNF144A-B [Jatropha curcas]
9 Hb_150766_020 0.2592623881 - - hypothetical protein VITISV_030841 [Vitis vinifera]
10 Hb_082407_010 0.2627514514 - - protein farnesyltransferase alpha subunit, putative [Ricinus communis]
11 Hb_164255_010 0.2647193957 - - PREDICTED: aspartate-semialdehyde dehydrogenase [Jatropha curcas]
12 Hb_010504_030 0.2701407133 - - calmodulin homolog {EST} [Brassica napus, Naehan, root, Peptide Partial, 53 aa]
13 Hb_021576_060 0.2713878274 - - conserved hypothetical protein [Ricinus communis]
14 Hb_007123_060 0.2736695604 - - PREDICTED: uncharacterized protein LOC105634060 [Jatropha curcas]
15 Hb_179812_010 0.2746377575 - - TdcA1-ORF1-ORF2 [Daucus carota]
16 Hb_008667_040 0.2759824119 - - glycerol-3-phosphate transporter family protein [Populus trichocarpa]
17 Hb_003073_050 0.2772346553 transcription factor TF Family: B3 PREDICTED: B3 domain-containing protein Os03g0620400-like [Jatropha curcas]
18 Hb_000007_460 0.2783327947 - - PREDICTED: uncharacterized protein LOC105641948 [Jatropha curcas]
19 Hb_000331_500 0.2786746824 transcription factor TF Family: C2H2 nucleic acid binding protein, putative [Ricinus communis]
20 Hb_007545_050 0.2797877052 - - -

Gene co-expression network

sample Hb_006541_090 Hb_006541_090 Hb_010068_100 Hb_010068_100 Hb_006541_090--Hb_010068_100 Hb_103790_010 Hb_103790_010 Hb_006541_090--Hb_103790_010 Hb_136765_010 Hb_136765_010 Hb_006541_090--Hb_136765_010 Hb_000253_030 Hb_000253_030 Hb_006541_090--Hb_000253_030 Hb_068922_010 Hb_068922_010 Hb_006541_090--Hb_068922_010 Hb_000327_290 Hb_000327_290 Hb_006541_090--Hb_000327_290 Hb_010068_100--Hb_000253_030 Hb_010068_100--Hb_136765_010 Hb_010068_100--Hb_068922_010 Hb_082407_010 Hb_082407_010 Hb_010068_100--Hb_082407_010 Hb_008667_040 Hb_008667_040 Hb_010068_100--Hb_008667_040 Hb_068804_080 Hb_068804_080 Hb_103790_010--Hb_068804_080 Hb_000264_290 Hb_000264_290 Hb_103790_010--Hb_000264_290 Hb_160203_010 Hb_160203_010 Hb_103790_010--Hb_160203_010 Hb_007136_020 Hb_007136_020 Hb_103790_010--Hb_007136_020 Hb_001300_050 Hb_001300_050 Hb_103790_010--Hb_001300_050 Hb_000331_500 Hb_000331_500 Hb_136765_010--Hb_000331_500 Hb_136765_010--Hb_068922_010 Hb_002141_020 Hb_002141_020 Hb_136765_010--Hb_002141_020 Hb_012867_010 Hb_012867_010 Hb_136765_010--Hb_012867_010 Hb_004241_040 Hb_004241_040 Hb_136765_010--Hb_004241_040 Hb_163599_010 Hb_163599_010 Hb_000253_030--Hb_163599_010 Hb_000253_030--Hb_136765_010 Hb_155541_010 Hb_155541_010 Hb_000253_030--Hb_155541_010 Hb_003551_010 Hb_003551_010 Hb_000253_030--Hb_003551_010 Hb_000253_030--Hb_008667_040 Hb_068922_010--Hb_012867_010 Hb_012120_030 Hb_012120_030 Hb_068922_010--Hb_012120_030 Hb_068922_010--Hb_000253_030 Hb_005271_020 Hb_005271_020 Hb_068922_010--Hb_005271_020 Hb_010504_030 Hb_010504_030 Hb_000327_290--Hb_010504_030 Hb_002687_080 Hb_002687_080 Hb_000327_290--Hb_002687_080 Hb_007123_060 Hb_007123_060 Hb_000327_290--Hb_007123_060 Hb_000327_290--Hb_082407_010 Hb_112047_010 Hb_112047_010 Hb_000327_290--Hb_112047_010 Hb_136731_010 Hb_136731_010 Hb_000327_290--Hb_136731_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0079743 0.0473753 0.0606646 0.0925257 0.102223 0.222076
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0724028 0.142431 0 0 0

CAGE analysis