Hb_001300_050

Information

Type -
Description -
Location Contig1300: 39581-41856
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001300_050 0.0 - - -
2 Hb_007136_020 0.2100845524 - - PREDICTED: oxygen-dependent coproporphyrinogen-III oxidase, chloroplastic [Populus euphratica]
3 Hb_103790_010 0.2412360196 - - PREDICTED: pre-mRNA-processing protein 40A isoform X4 [Jatropha curcas]
4 Hb_130134_020 0.2550297304 - - -
5 Hb_006816_340 0.259739135 - - -
6 Hb_002291_040 0.2632977247 - - hypothetical protein VITISV_030841 [Vitis vinifera]
7 Hb_000003_180 0.2783556791 - - conserved hypothetical protein [Ricinus communis]
8 Hb_003297_020 0.285142161 - - unknown [Populus trichocarpa x Populus deltoides]
9 Hb_000295_090 0.2875079234 - - Clathrin light chain 2 [Glycine soja]
10 Hb_116638_010 0.2876297671 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000926_350 0.2883781673 transcription factor TF Family: SWI/SNF-BAF60b PREDICTED: upstream activation factor subunit UAF30 [Jatropha curcas]
12 Hb_000032_530 0.2928269162 - - -
13 Hb_126112_010 0.2929800943 - - PREDICTED: uncharacterized protein LOC105636715 [Jatropha curcas]
14 Hb_128998_010 0.2947632426 - - PREDICTED: uncharacterized protein LOC105650916 [Jatropha curcas]
15 Hb_112047_010 0.295437846 - - -
16 Hb_159307_010 0.2956834129 - - PREDICTED: probable isoleucine--tRNA ligase, cytoplasmic [Jatropha curcas]
17 Hb_130134_030 0.2964032234 transcription factor TF Family: C3H hypothetical protein JCGZ_14472 [Jatropha curcas]
18 Hb_156526_010 0.2970263104 - - PREDICTED: uncharacterized protein LOC105636715 [Jatropha curcas]
19 Hb_000152_220 0.2985067573 - - acc synthase, putative [Ricinus communis]
20 Hb_001767_120 0.2986317776 - - -

Gene co-expression network

sample Hb_001300_050 Hb_001300_050 Hb_007136_020 Hb_007136_020 Hb_001300_050--Hb_007136_020 Hb_103790_010 Hb_103790_010 Hb_001300_050--Hb_103790_010 Hb_130134_020 Hb_130134_020 Hb_001300_050--Hb_130134_020 Hb_006816_340 Hb_006816_340 Hb_001300_050--Hb_006816_340 Hb_002291_040 Hb_002291_040 Hb_001300_050--Hb_002291_040 Hb_000003_180 Hb_000003_180 Hb_001300_050--Hb_000003_180 Hb_124961_010 Hb_124961_010 Hb_007136_020--Hb_124961_010 Hb_003297_020 Hb_003297_020 Hb_007136_020--Hb_003297_020 Hb_101020_010 Hb_101020_010 Hb_007136_020--Hb_101020_010 Hb_170532_010 Hb_170532_010 Hb_007136_020--Hb_170532_010 Hb_007136_020--Hb_006816_340 Hb_070385_010 Hb_070385_010 Hb_007136_020--Hb_070385_010 Hb_068804_080 Hb_068804_080 Hb_103790_010--Hb_068804_080 Hb_006541_090 Hb_006541_090 Hb_103790_010--Hb_006541_090 Hb_000264_290 Hb_000264_290 Hb_103790_010--Hb_000264_290 Hb_160203_010 Hb_160203_010 Hb_103790_010--Hb_160203_010 Hb_103790_010--Hb_007136_020 Hb_130134_030 Hb_130134_030 Hb_130134_020--Hb_130134_030 Hb_134310_020 Hb_134310_020 Hb_130134_020--Hb_134310_020 Hb_000295_090 Hb_000295_090 Hb_130134_020--Hb_000295_090 Hb_178041_010 Hb_178041_010 Hb_130134_020--Hb_178041_010 Hb_003376_070 Hb_003376_070 Hb_130134_020--Hb_003376_070 Hb_088428_010 Hb_088428_010 Hb_130134_020--Hb_088428_010 Hb_004570_050 Hb_004570_050 Hb_006816_340--Hb_004570_050 Hb_006816_340--Hb_124961_010 Hb_006816_340--Hb_170532_010 Hb_003895_030 Hb_003895_030 Hb_006816_340--Hb_003895_030 Hb_171619_010 Hb_171619_010 Hb_006816_340--Hb_171619_010 Hb_151939_010 Hb_151939_010 Hb_002291_040--Hb_151939_010 Hb_001385_080 Hb_001385_080 Hb_002291_040--Hb_001385_080 Hb_079993_010 Hb_079993_010 Hb_002291_040--Hb_079993_010 Hb_005928_070 Hb_005928_070 Hb_002291_040--Hb_005928_070 Hb_001231_070 Hb_001231_070 Hb_002291_040--Hb_001231_070 Hb_000523_100 Hb_000523_100 Hb_000003_180--Hb_000523_100 Hb_000617_170 Hb_000617_170 Hb_000003_180--Hb_000617_170 Hb_000976_030 Hb_000976_030 Hb_000003_180--Hb_000976_030 Hb_088065_010 Hb_088065_010 Hb_000003_180--Hb_088065_010 Hb_003581_010 Hb_003581_010 Hb_000003_180--Hb_003581_010 Hb_000003_180--Hb_130134_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0674062 0.116622 0.0560062 0.100226 0.0680767 0.480021
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.124621 0 0 0

CAGE analysis