Hb_002291_040

Information

Type -
Description -
Location Contig2291: 42597-43994
Sequence    

Annotation

kegg
ID csv:101218085
description uncharacterized LOC101218085
nr
ID CAN60490.1
description hypothetical protein VITISV_030841 [Vitis vinifera]
swissprot
ID -
description -
trembl
ID A5AQM5
description Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_030841 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002291_040 0.0 - - hypothetical protein VITISV_030841 [Vitis vinifera]
2 Hb_151939_010 0.25339409 - - PREDICTED: far upstream element-binding protein 2 isoform X3 [Jatropha curcas]
3 Hb_001385_080 0.2617982011 - - -
4 Hb_001300_050 0.2632977247 - - -
5 Hb_079993_010 0.2656241042 - - PREDICTED: uncharacterized protein LOC103336399 [Prunus mume]
6 Hb_005928_070 0.2784103411 - - hypothetical protein POPTR_0002s04520g [Populus trichocarpa]
7 Hb_001231_070 0.28696435 - - -
8 Hb_000589_230 0.2871476984 - - unknown [Picea sitchensis]
9 Hb_134956_010 0.2898568796 - - PREDICTED: (S)-coclaurine N-methyltransferase [Jatropha curcas]
10 Hb_070385_010 0.2924386533 - - PREDICTED: uncharacterized protein LOC103323653 [Prunus mume]
11 Hb_000291_130 0.2941273095 - - -
12 Hb_000204_020 0.2951397435 transcription factor TF Family: GNAT PREDICTED: uncharacterized N-acetyltransferase ycf52 [Jatropha curcas]
13 Hb_001385_090 0.2957840023 - - PREDICTED: uncharacterized protein LOC105644404 isoform X2 [Jatropha curcas]
14 Hb_007447_020 0.2971389979 - - hypothetical protein CISIN_1g038065mg [Citrus sinensis]
15 Hb_115045_010 0.3000671325 - - ATP binding protein, putative [Ricinus communis]
16 Hb_143800_010 0.3000702022 - - hypothetical protein POPTR_0010s21410g, partial [Populus trichocarpa]
17 Hb_000084_130 0.3010223344 - - -
18 Hb_060054_010 0.3010838957 - - NADH-ubiquinone oxidoreductase subunit B17.2, putative [Ricinus communis]
19 Hb_005542_090 0.3044864526 - - PREDICTED: putative disease resistance protein RGA4, partial [Elaeis guineensis]
20 Hb_000261_360 0.3047456088 - - unknown [Lotus japonicus]

Gene co-expression network

sample Hb_002291_040 Hb_002291_040 Hb_151939_010 Hb_151939_010 Hb_002291_040--Hb_151939_010 Hb_001385_080 Hb_001385_080 Hb_002291_040--Hb_001385_080 Hb_001300_050 Hb_001300_050 Hb_002291_040--Hb_001300_050 Hb_079993_010 Hb_079993_010 Hb_002291_040--Hb_079993_010 Hb_005928_070 Hb_005928_070 Hb_002291_040--Hb_005928_070 Hb_001231_070 Hb_001231_070 Hb_002291_040--Hb_001231_070 Hb_143800_010 Hb_143800_010 Hb_151939_010--Hb_143800_010 Hb_063480_010 Hb_063480_010 Hb_151939_010--Hb_063480_010 Hb_003925_030 Hb_003925_030 Hb_151939_010--Hb_003925_030 Hb_005542_090 Hb_005542_090 Hb_151939_010--Hb_005542_090 Hb_088428_010 Hb_088428_010 Hb_151939_010--Hb_088428_010 Hb_122567_020 Hb_122567_020 Hb_001385_080--Hb_122567_020 Hb_005933_010 Hb_005933_010 Hb_001385_080--Hb_005933_010 Hb_059952_010 Hb_059952_010 Hb_001385_080--Hb_059952_010 Hb_000805_300 Hb_000805_300 Hb_001385_080--Hb_000805_300 Hb_001454_110 Hb_001454_110 Hb_001385_080--Hb_001454_110 Hb_101151_030 Hb_101151_030 Hb_001385_080--Hb_101151_030 Hb_007136_020 Hb_007136_020 Hb_001300_050--Hb_007136_020 Hb_103790_010 Hb_103790_010 Hb_001300_050--Hb_103790_010 Hb_130134_020 Hb_130134_020 Hb_001300_050--Hb_130134_020 Hb_006816_340 Hb_006816_340 Hb_001300_050--Hb_006816_340 Hb_000003_180 Hb_000003_180 Hb_001300_050--Hb_000003_180 Hb_000926_350 Hb_000926_350 Hb_079993_010--Hb_000926_350 Hb_145827_010 Hb_145827_010 Hb_079993_010--Hb_145827_010 Hb_000227_030 Hb_000227_030 Hb_079993_010--Hb_000227_030 Hb_153461_010 Hb_153461_010 Hb_079993_010--Hb_153461_010 Hb_124141_010 Hb_124141_010 Hb_079993_010--Hb_124141_010 Hb_001712_080 Hb_001712_080 Hb_005928_070--Hb_001712_080 Hb_059978_010 Hb_059978_010 Hb_005928_070--Hb_059978_010 Hb_002379_040 Hb_002379_040 Hb_005928_070--Hb_002379_040 Hb_006995_010 Hb_006995_010 Hb_005928_070--Hb_006995_010 Hb_000289_080 Hb_000289_080 Hb_005928_070--Hb_000289_080 Hb_120052_010 Hb_120052_010 Hb_005928_070--Hb_120052_010 Hb_001231_070--Hb_006995_010 Hb_068014_010 Hb_068014_010 Hb_001231_070--Hb_068014_010 Hb_169170_010 Hb_169170_010 Hb_001231_070--Hb_169170_010 Hb_001222_040 Hb_001222_040 Hb_001231_070--Hb_001222_040 Hb_003656_150 Hb_003656_150 Hb_001231_070--Hb_003656_150 Hb_000683_090 Hb_000683_090 Hb_001231_070--Hb_000683_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0190634 0 0.0114121 0.0475339 0.0153502 0.138439
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0274777 0 0 0

CAGE analysis