Hb_000926_350

Information

Type transcription factor
Description TF Family: SWI/SNF-BAF60b
Location Contig926: 324242-325186
Sequence    

Annotation

kegg
ID crb:CARUB_v10006096mg
description hypothetical protein
nr
ID XP_012070905.1
description PREDICTED: upstream activation factor subunit UAF30 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KST2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00949 PE=4 SV=1
Gene Ontology
ID GO:0005515
description upstream activation factor subunit uaf30-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000926_350 0.0 transcription factor TF Family: SWI/SNF-BAF60b PREDICTED: upstream activation factor subunit UAF30 [Jatropha curcas]
2 Hb_001907_090 0.2193109111 - - -
3 Hb_000684_480 0.2382696036 transcription factor TF Family: Orphans -
4 Hb_000066_180 0.2473837977 - - hypothetical protein POPTR_0008s02710g [Populus trichocarpa]
5 Hb_071079_050 0.2546755952 - - -
6 Hb_004958_040 0.2721814867 - - -
7 Hb_001300_050 0.2883781673 - - -
8 Hb_001418_060 0.2915219472 - - -
9 Hb_079993_010 0.293601961 - - PREDICTED: uncharacterized protein LOC103336399 [Prunus mume]
10 Hb_000003_180 0.2943212363 - - conserved hypothetical protein [Ricinus communis]
11 Hb_001231_070 0.2986752573 - - -
12 Hb_130134_020 0.3073552033 - - -
13 Hb_000523_100 0.3128228263 - - PREDICTED: protein DJ-1 homolog D-like [Populus euphratica]
14 Hb_000084_130 0.3135671116 - - -
15 Hb_005016_070 0.3145865742 - - -
16 Hb_001385_080 0.3165799699 - - -
17 Hb_060054_010 0.3178648447 - - NADH-ubiquinone oxidoreductase subunit B17.2, putative [Ricinus communis]
18 Hb_046120_010 0.3191716334 - - -
19 Hb_005542_090 0.3213997259 - - PREDICTED: putative disease resistance protein RGA4, partial [Elaeis guineensis]
20 Hb_122567_020 0.3249641665 - - hypothetical protein CICLE_v10009900mg [Citrus clementina]

Gene co-expression network

sample Hb_000926_350 Hb_000926_350 Hb_001907_090 Hb_001907_090 Hb_000926_350--Hb_001907_090 Hb_000684_480 Hb_000684_480 Hb_000926_350--Hb_000684_480 Hb_000066_180 Hb_000066_180 Hb_000926_350--Hb_000066_180 Hb_071079_050 Hb_071079_050 Hb_000926_350--Hb_071079_050 Hb_004958_040 Hb_004958_040 Hb_000926_350--Hb_004958_040 Hb_001300_050 Hb_001300_050 Hb_000926_350--Hb_001300_050 Hb_001907_090--Hb_004958_040 Hb_001907_090--Hb_000684_480 Hb_122567_020 Hb_122567_020 Hb_001907_090--Hb_122567_020 Hb_001907_090--Hb_000066_180 Hb_001385_080 Hb_001385_080 Hb_001907_090--Hb_001385_080 Hb_000084_130 Hb_000084_130 Hb_001907_090--Hb_000084_130 Hb_000316_090 Hb_000316_090 Hb_000684_480--Hb_000316_090 Hb_003029_100 Hb_003029_100 Hb_000684_480--Hb_003029_100 Hb_000684_480--Hb_004958_040 Hb_124141_010 Hb_124141_010 Hb_000684_480--Hb_124141_010 Hb_075745_010 Hb_075745_010 Hb_000684_480--Hb_075745_010 Hb_000193_030 Hb_000193_030 Hb_000066_180--Hb_000193_030 Hb_000340_330 Hb_000340_330 Hb_000066_180--Hb_000340_330 Hb_005318_020 Hb_005318_020 Hb_000066_180--Hb_005318_020 Hb_148658_010 Hb_148658_010 Hb_000066_180--Hb_148658_010 Hb_094132_010 Hb_094132_010 Hb_000066_180--Hb_094132_010 Hb_071079_050--Hb_001907_090 Hb_011639_090 Hb_011639_090 Hb_071079_050--Hb_011639_090 Hb_071079_050--Hb_000684_480 Hb_012094_030 Hb_012094_030 Hb_071079_050--Hb_012094_030 Hb_007188_050 Hb_007188_050 Hb_071079_050--Hb_007188_050 Hb_059952_010 Hb_059952_010 Hb_004958_040--Hb_059952_010 Hb_004958_040--Hb_122567_020 Hb_005933_010 Hb_005933_010 Hb_004958_040--Hb_005933_010 Hb_000617_170 Hb_000617_170 Hb_004958_040--Hb_000617_170 Hb_000805_300 Hb_000805_300 Hb_004958_040--Hb_000805_300 Hb_007136_020 Hb_007136_020 Hb_001300_050--Hb_007136_020 Hb_103790_010 Hb_103790_010 Hb_001300_050--Hb_103790_010 Hb_130134_020 Hb_130134_020 Hb_001300_050--Hb_130134_020 Hb_006816_340 Hb_006816_340 Hb_001300_050--Hb_006816_340 Hb_002291_040 Hb_002291_040 Hb_001300_050--Hb_002291_040 Hb_000003_180 Hb_000003_180 Hb_001300_050--Hb_000003_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.446284 0.676431 0 1.08422 0 4.30986
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.605035 0 0.140575 0

CAGE analysis