Hb_071079_050

Information

Type -
Description -
Location Contig71079: 40742-41799
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_55281: 40594-43064
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_071079_050 0.0 - - -
2 Hb_001907_090 0.2213378628 - - -
3 Hb_011639_090 0.229240427 - - PREDICTED: transcription factor bHLH75-like [Populus euphratica]
4 Hb_000684_480 0.2303016396 transcription factor TF Family: Orphans -
5 Hb_012094_030 0.2310023772 - - PREDICTED: uncharacterized protein LOC103699727 [Phoenix dactylifera]
6 Hb_000926_350 0.2546755952 transcription factor TF Family: SWI/SNF-BAF60b PREDICTED: upstream activation factor subunit UAF30 [Jatropha curcas]
7 Hb_007188_050 0.2557496057 - - -
8 Hb_007083_050 0.2587627562 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 12-like isoform X2 [Nelumbo nucifera]
9 Hb_069868_010 0.2746263143 - - hypothetical protein JCGZ_14833 [Jatropha curcas]
10 Hb_079978_010 0.276375899 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP71 isoform X1 [Nelumbo nucifera]
11 Hb_003623_020 0.2777007748 - - -
12 Hb_096490_010 0.2807144501 - - hypothetical protein CICLE_v100210772mg, partial [Citrus clementina]
13 Hb_000805_300 0.281642355 - - -
14 Hb_001579_040 0.2826483133 - - -
15 Hb_000066_180 0.2856506589 - - hypothetical protein POPTR_0008s02710g [Populus trichocarpa]
16 Hb_004958_040 0.2872247114 - - -
17 Hb_001385_080 0.2896484599 - - -
18 Hb_001691_160 0.2903424308 - - conserved hypothetical protein [Ricinus communis]
19 Hb_001454_110 0.2905598547 - - hypothetical protein POPTR_0026s00250g [Populus trichocarpa]
20 Hb_032531_040 0.2924263481 - - E3 ISG15--protein ligase HERC5 [Gossypium arboreum]

Gene co-expression network

sample Hb_071079_050 Hb_071079_050 Hb_001907_090 Hb_001907_090 Hb_071079_050--Hb_001907_090 Hb_011639_090 Hb_011639_090 Hb_071079_050--Hb_011639_090 Hb_000684_480 Hb_000684_480 Hb_071079_050--Hb_000684_480 Hb_012094_030 Hb_012094_030 Hb_071079_050--Hb_012094_030 Hb_000926_350 Hb_000926_350 Hb_071079_050--Hb_000926_350 Hb_007188_050 Hb_007188_050 Hb_071079_050--Hb_007188_050 Hb_004958_040 Hb_004958_040 Hb_001907_090--Hb_004958_040 Hb_001907_090--Hb_000684_480 Hb_122567_020 Hb_122567_020 Hb_001907_090--Hb_122567_020 Hb_000066_180 Hb_000066_180 Hb_001907_090--Hb_000066_180 Hb_001385_080 Hb_001385_080 Hb_001907_090--Hb_001385_080 Hb_000084_130 Hb_000084_130 Hb_001907_090--Hb_000084_130 Hb_011639_090--Hb_007188_050 Hb_003623_020 Hb_003623_020 Hb_011639_090--Hb_003623_020 Hb_011639_090--Hb_001385_080 Hb_001691_160 Hb_001691_160 Hb_011639_090--Hb_001691_160 Hb_079978_010 Hb_079978_010 Hb_011639_090--Hb_079978_010 Hb_000316_090 Hb_000316_090 Hb_000684_480--Hb_000316_090 Hb_003029_100 Hb_003029_100 Hb_000684_480--Hb_003029_100 Hb_000684_480--Hb_004958_040 Hb_124141_010 Hb_124141_010 Hb_000684_480--Hb_124141_010 Hb_075745_010 Hb_075745_010 Hb_000684_480--Hb_075745_010 Hb_006065_040 Hb_006065_040 Hb_012094_030--Hb_006065_040 Hb_069868_010 Hb_069868_010 Hb_012094_030--Hb_069868_010 Hb_003695_010 Hb_003695_010 Hb_012094_030--Hb_003695_010 Hb_000252_140 Hb_000252_140 Hb_012094_030--Hb_000252_140 Hb_143800_010 Hb_143800_010 Hb_012094_030--Hb_143800_010 Hb_000926_350--Hb_001907_090 Hb_000926_350--Hb_000684_480 Hb_000926_350--Hb_000066_180 Hb_000926_350--Hb_004958_040 Hb_001300_050 Hb_001300_050 Hb_000926_350--Hb_001300_050 Hb_000903_030 Hb_000903_030 Hb_007188_050--Hb_000903_030 Hb_007188_050--Hb_079978_010 Hb_007188_050--Hb_122567_020 Hb_000291_130 Hb_000291_130 Hb_007188_050--Hb_000291_130 Hb_007083_050 Hb_007083_050 Hb_007188_050--Hb_007083_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0904882 0 0.384586 0 2.85829
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.380236 0 0.250075 0

CAGE analysis