Hb_000903_030

Information

Type -
Description -
Location Contig903: 59579-60424
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_61971: 59550-60505
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000903_030 0.0 - - -
2 Hb_007188_050 0.1763224573 - - -
3 Hb_032531_050 0.2215255244 - - hypothetical protein CICLE_v10003980mg [Citrus clementina]
4 Hb_002988_020 0.2245911175 - - PREDICTED: uncharacterized protein LOC105637371 [Jatropha curcas]
5 Hb_153461_010 0.2653749927 - - PREDICTED: uncharacterized protein LOC105640954 [Jatropha curcas]
6 Hb_079978_010 0.2660463768 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP71 isoform X1 [Nelumbo nucifera]
7 Hb_000684_480 0.2716617886 transcription factor TF Family: Orphans -
8 Hb_017134_020 0.2752008819 - - -
9 Hb_001454_110 0.2754844538 - - hypothetical protein POPTR_0026s00250g [Populus trichocarpa]
10 Hb_032531_040 0.2782377309 - - E3 ISG15--protein ligase HERC5 [Gossypium arboreum]
11 Hb_005933_010 0.2885758476 - - PREDICTED: putative disease resistance RPP13-like protein 1 [Populus euphratica]
12 Hb_000002_030 0.2926776464 - - -
13 Hb_000951_050 0.2926901588 - - -
14 Hb_032531_060 0.2942043897 - - hypothetical protein PRUPE_ppa017035mg, partial [Prunus persica]
15 Hb_000805_300 0.2942822567 - - -
16 Hb_007083_050 0.2967414018 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 12-like isoform X2 [Nelumbo nucifera]
17 Hb_000316_090 0.3005547802 - - -
18 Hb_101151_030 0.3005733739 - - -
19 Hb_005735_010 0.3020529081 - - DNA (cytosine-5)-methyltransferase, putative [Ricinus communis]
20 Hb_034579_010 0.3037807247 - - PREDICTED: nudix hydrolase 27, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_000903_030 Hb_000903_030 Hb_007188_050 Hb_007188_050 Hb_000903_030--Hb_007188_050 Hb_032531_050 Hb_032531_050 Hb_000903_030--Hb_032531_050 Hb_002988_020 Hb_002988_020 Hb_000903_030--Hb_002988_020 Hb_153461_010 Hb_153461_010 Hb_000903_030--Hb_153461_010 Hb_079978_010 Hb_079978_010 Hb_000903_030--Hb_079978_010 Hb_000684_480 Hb_000684_480 Hb_000903_030--Hb_000684_480 Hb_007188_050--Hb_079978_010 Hb_011639_090 Hb_011639_090 Hb_007188_050--Hb_011639_090 Hb_122567_020 Hb_122567_020 Hb_007188_050--Hb_122567_020 Hb_000291_130 Hb_000291_130 Hb_007188_050--Hb_000291_130 Hb_007083_050 Hb_007083_050 Hb_007188_050--Hb_007083_050 Hb_032531_040 Hb_032531_040 Hb_032531_050--Hb_032531_040 Hb_000002_030 Hb_000002_030 Hb_032531_050--Hb_000002_030 Hb_001454_110 Hb_001454_110 Hb_032531_050--Hb_001454_110 Hb_000316_090 Hb_000316_090 Hb_032531_050--Hb_000316_090 Hb_000805_300 Hb_000805_300 Hb_032531_050--Hb_000805_300 Hb_034579_010 Hb_034579_010 Hb_032531_050--Hb_034579_010 Hb_005735_010 Hb_005735_010 Hb_002988_020--Hb_005735_010 Hb_179112_010 Hb_179112_010 Hb_002988_020--Hb_179112_010 Hb_017134_020 Hb_017134_020 Hb_002988_020--Hb_017134_020 Hb_000230_340 Hb_000230_340 Hb_002988_020--Hb_000230_340 Hb_002988_020--Hb_032531_050 Hb_054936_010 Hb_054936_010 Hb_153461_010--Hb_054936_010 Hb_124141_010 Hb_124141_010 Hb_153461_010--Hb_124141_010 Hb_153461_010--Hb_000684_480 Hb_079993_010 Hb_079993_010 Hb_153461_010--Hb_079993_010 Hb_000086_190 Hb_000086_190 Hb_153461_010--Hb_000086_190 Hb_005318_020 Hb_005318_020 Hb_079978_010--Hb_005318_020 Hb_079978_010--Hb_007083_050 Hb_079978_010--Hb_122567_020 Hb_101151_030 Hb_101151_030 Hb_079978_010--Hb_101151_030 Hb_079978_010--Hb_000805_300 Hb_007447_020 Hb_007447_020 Hb_079978_010--Hb_007447_020 Hb_001907_090 Hb_001907_090 Hb_000684_480--Hb_001907_090 Hb_000684_480--Hb_000316_090 Hb_003029_100 Hb_003029_100 Hb_000684_480--Hb_003029_100 Hb_004958_040 Hb_004958_040 Hb_000684_480--Hb_004958_040 Hb_000684_480--Hb_124141_010 Hb_075745_010 Hb_075745_010 Hb_000684_480--Hb_075745_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 1.56578 0.203928 11.2818
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.785077 2.10167 0.183394 0

CAGE analysis