Hb_007188_050

Information

Type -
Description -
Location Contig7188: 63178-64063
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID GO:0005694
description dna topoisomerase 3-alpha isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_55532: 43052-83584
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007188_050 0.0 - - -
2 Hb_000903_030 0.1763224573 - - -
3 Hb_079978_010 0.190501523 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP71 isoform X1 [Nelumbo nucifera]
4 Hb_011639_090 0.2140161189 - - PREDICTED: transcription factor bHLH75-like [Populus euphratica]
5 Hb_122567_020 0.2144225476 - - hypothetical protein CICLE_v10009900mg [Citrus clementina]
6 Hb_000291_130 0.2153616764 - - -
7 Hb_007083_050 0.2172442196 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 12-like isoform X2 [Nelumbo nucifera]
8 Hb_001385_080 0.2225637802 - - -
9 Hb_001454_110 0.2248162549 - - hypothetical protein POPTR_0026s00250g [Populus trichocarpa]
10 Hb_005933_010 0.2263758782 - - PREDICTED: putative disease resistance RPP13-like protein 1 [Populus euphratica]
11 Hb_002204_040 0.2294222434 - - hypothetical protein B456_008G181200 [Gossypium raimondii]
12 Hb_000805_300 0.2333348782 - - -
13 Hb_005318_020 0.236887621 - - PREDICTED: lecithin-cholesterol acyltransferase-like 4 isoform X3 [Jatropha curcas]
14 Hb_007447_020 0.2392130129 - - hypothetical protein CISIN_1g038065mg [Citrus sinensis]
15 Hb_005839_010 0.2405810869 - - 30S ribosomal protein s13 [Camellia sinensis]
16 Hb_000340_330 0.2408645933 - - PREDICTED: probable indole-3-acetic acid-amido synthetase GH3.6 [Jatropha curcas]
17 Hb_000684_480 0.2411828009 transcription factor TF Family: Orphans -
18 Hb_001222_040 0.2420816823 - - -
19 Hb_032531_040 0.2473463321 - - E3 ISG15--protein ligase HERC5 [Gossypium arboreum]
20 Hb_032531_050 0.2474374151 - - hypothetical protein CICLE_v10003980mg [Citrus clementina]

Gene co-expression network

sample Hb_007188_050 Hb_007188_050 Hb_000903_030 Hb_000903_030 Hb_007188_050--Hb_000903_030 Hb_079978_010 Hb_079978_010 Hb_007188_050--Hb_079978_010 Hb_011639_090 Hb_011639_090 Hb_007188_050--Hb_011639_090 Hb_122567_020 Hb_122567_020 Hb_007188_050--Hb_122567_020 Hb_000291_130 Hb_000291_130 Hb_007188_050--Hb_000291_130 Hb_007083_050 Hb_007083_050 Hb_007188_050--Hb_007083_050 Hb_032531_050 Hb_032531_050 Hb_000903_030--Hb_032531_050 Hb_002988_020 Hb_002988_020 Hb_000903_030--Hb_002988_020 Hb_153461_010 Hb_153461_010 Hb_000903_030--Hb_153461_010 Hb_000903_030--Hb_079978_010 Hb_000684_480 Hb_000684_480 Hb_000903_030--Hb_000684_480 Hb_005318_020 Hb_005318_020 Hb_079978_010--Hb_005318_020 Hb_079978_010--Hb_007083_050 Hb_079978_010--Hb_122567_020 Hb_101151_030 Hb_101151_030 Hb_079978_010--Hb_101151_030 Hb_000805_300 Hb_000805_300 Hb_079978_010--Hb_000805_300 Hb_007447_020 Hb_007447_020 Hb_079978_010--Hb_007447_020 Hb_003623_020 Hb_003623_020 Hb_011639_090--Hb_003623_020 Hb_071079_050 Hb_071079_050 Hb_011639_090--Hb_071079_050 Hb_001385_080 Hb_001385_080 Hb_011639_090--Hb_001385_080 Hb_001691_160 Hb_001691_160 Hb_011639_090--Hb_001691_160 Hb_011639_090--Hb_079978_010 Hb_005933_010 Hb_005933_010 Hb_122567_020--Hb_005933_010 Hb_122567_020--Hb_000805_300 Hb_000617_170 Hb_000617_170 Hb_122567_020--Hb_000617_170 Hb_059952_010 Hb_059952_010 Hb_122567_020--Hb_059952_010 Hb_122567_020--Hb_001385_080 Hb_001235_060 Hb_001235_060 Hb_122567_020--Hb_001235_060 Hb_002450_130 Hb_002450_130 Hb_000291_130--Hb_002450_130 Hb_002204_040 Hb_002204_040 Hb_000291_130--Hb_002204_040 Hb_001579_040 Hb_001579_040 Hb_000291_130--Hb_001579_040 Hb_000671_040 Hb_000671_040 Hb_000291_130--Hb_000671_040 Hb_008096_020 Hb_008096_020 Hb_000291_130--Hb_008096_020 Hb_002972_060 Hb_002972_060 Hb_000291_130--Hb_002972_060 Hb_007083_050--Hb_005318_020 Hb_169170_010 Hb_169170_010 Hb_007083_050--Hb_169170_010 Hb_177103_010 Hb_177103_010 Hb_007083_050--Hb_177103_010 Hb_000084_130 Hb_000084_130 Hb_007083_050--Hb_000084_130 Hb_007083_050--Hb_122567_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0693735 0.992368 0.154955 4.86119
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.305707 0.245576 0.130681 0

CAGE analysis