Hb_011639_090

Information

Type -
Description -
Location Contig11639: 80206-80706
Sequence    

Annotation

kegg
ID pop:POPTR_0005s15590g
description hypothetical protein
nr
ID XP_011021250.1
description PREDICTED: transcription factor bHLH75-like [Populus euphratica]
swissprot
ID -
description -
trembl
ID U5GG63
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0005s15590g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011639_090 0.0 - - PREDICTED: transcription factor bHLH75-like [Populus euphratica]
2 Hb_007188_050 0.2140161189 - - -
3 Hb_003623_020 0.2173694483 - - -
4 Hb_071079_050 0.229240427 - - -
5 Hb_001385_080 0.229395535 - - -
6 Hb_001691_160 0.2415268381 - - conserved hypothetical protein [Ricinus communis]
7 Hb_079978_010 0.2578594154 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP71 isoform X1 [Nelumbo nucifera]
8 Hb_007083_050 0.2597110246 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 12-like isoform X2 [Nelumbo nucifera]
9 Hb_122567_020 0.2597215823 - - hypothetical protein CICLE_v10009900mg [Citrus clementina]
10 Hb_000805_300 0.2642372486 - - -
11 Hb_052402_010 0.267487276 - - -
12 Hb_005933_010 0.268939543 - - PREDICTED: putative disease resistance RPP13-like protein 1 [Populus euphratica]
13 Hb_001907_090 0.2722734402 - - -
14 Hb_005318_020 0.2733760677 - - PREDICTED: lecithin-cholesterol acyltransferase-like 4 isoform X3 [Jatropha curcas]
15 Hb_000617_170 0.2752412047 - - -
16 Hb_000084_130 0.2792990689 - - -
17 Hb_096490_010 0.2802279725 - - hypothetical protein CICLE_v100210772mg, partial [Citrus clementina]
18 Hb_101151_030 0.2880544631 - - -
19 Hb_021068_030 0.2898813671 transcription factor TF Family: M-type hypothetical protein B456_010G032700 [Gossypium raimondii]
20 Hb_001454_110 0.2905249814 - - hypothetical protein POPTR_0026s00250g [Populus trichocarpa]

Gene co-expression network

sample Hb_011639_090 Hb_011639_090 Hb_007188_050 Hb_007188_050 Hb_011639_090--Hb_007188_050 Hb_003623_020 Hb_003623_020 Hb_011639_090--Hb_003623_020 Hb_071079_050 Hb_071079_050 Hb_011639_090--Hb_071079_050 Hb_001385_080 Hb_001385_080 Hb_011639_090--Hb_001385_080 Hb_001691_160 Hb_001691_160 Hb_011639_090--Hb_001691_160 Hb_079978_010 Hb_079978_010 Hb_011639_090--Hb_079978_010 Hb_000903_030 Hb_000903_030 Hb_007188_050--Hb_000903_030 Hb_007188_050--Hb_079978_010 Hb_122567_020 Hb_122567_020 Hb_007188_050--Hb_122567_020 Hb_000291_130 Hb_000291_130 Hb_007188_050--Hb_000291_130 Hb_007083_050 Hb_007083_050 Hb_007188_050--Hb_007083_050 Hb_101151_030 Hb_101151_030 Hb_003623_020--Hb_101151_030 Hb_000805_300 Hb_000805_300 Hb_003623_020--Hb_000805_300 Hb_003623_020--Hb_079978_010 Hb_010172_060 Hb_010172_060 Hb_003623_020--Hb_010172_060 Hb_144552_010 Hb_144552_010 Hb_003623_020--Hb_144552_010 Hb_003623_020--Hb_001691_160 Hb_001907_090 Hb_001907_090 Hb_071079_050--Hb_001907_090 Hb_000684_480 Hb_000684_480 Hb_071079_050--Hb_000684_480 Hb_012094_030 Hb_012094_030 Hb_071079_050--Hb_012094_030 Hb_000926_350 Hb_000926_350 Hb_071079_050--Hb_000926_350 Hb_071079_050--Hb_007188_050 Hb_001385_080--Hb_122567_020 Hb_005933_010 Hb_005933_010 Hb_001385_080--Hb_005933_010 Hb_059952_010 Hb_059952_010 Hb_001385_080--Hb_059952_010 Hb_001385_080--Hb_000805_300 Hb_001454_110 Hb_001454_110 Hb_001385_080--Hb_001454_110 Hb_001385_080--Hb_101151_030 Hb_001691_160--Hb_005933_010 Hb_000002_030 Hb_000002_030 Hb_001691_160--Hb_000002_030 Hb_001235_060 Hb_001235_060 Hb_001691_160--Hb_001235_060 Hb_000115_270 Hb_000115_270 Hb_001691_160--Hb_000115_270 Hb_001691_160--Hb_001385_080 Hb_001691_160--Hb_101151_030 Hb_005318_020 Hb_005318_020 Hb_079978_010--Hb_005318_020 Hb_079978_010--Hb_007083_050 Hb_079978_010--Hb_122567_020 Hb_079978_010--Hb_101151_030 Hb_079978_010--Hb_000805_300 Hb_007447_020 Hb_007447_020 Hb_079978_010--Hb_007447_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0873949 0.444022 0.206105 3.30478
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.204183 0 0.452317 0

CAGE analysis