Hb_012094_030

Information

Type -
Description -
Location Contig12094: 47303-48079
Sequence    

Annotation

kegg
ID pda:103699727
description uncharacterized LOC103699727
nr
ID XP_008779951.1
description PREDICTED: uncharacterized protein LOC103699727 [Phoenix dactylifera]
swissprot
ID -
description -
trembl
ID M1DF56
description Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400037635 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012094_030 0.0 - - PREDICTED: uncharacterized protein LOC103699727 [Phoenix dactylifera]
2 Hb_006065_040 0.2281704899 - - -
3 Hb_071079_050 0.2310023772 - - -
4 Hb_069868_010 0.2802966306 - - hypothetical protein JCGZ_14833 [Jatropha curcas]
5 Hb_003695_010 0.2830168966 - - PREDICTED: uncharacterized protein LOC104104926 [Nicotiana tomentosiformis]
6 Hb_000252_140 0.2927640788 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
7 Hb_143800_010 0.3025438535 - - hypothetical protein POPTR_0010s21410g, partial [Populus trichocarpa]
8 Hb_015026_150 0.3101224083 - - Nuclease PA3, putative [Ricinus communis]
9 Hb_001584_320 0.3107449627 - - PREDICTED: zinc finger CCCH domain-containing protein 3 [Jatropha curcas]
10 Hb_120052_010 0.3125556385 - - hypothetical protein PRUPE_ppa1027171mg [Prunus persica]
11 Hb_011639_090 0.3171738415 - - PREDICTED: transcription factor bHLH75-like [Populus euphratica]
12 Hb_003029_100 0.3233120915 - - -
13 Hb_000668_020 0.3242971898 - - -
14 Hb_000684_480 0.3364578835 transcription factor TF Family: Orphans -
15 Hb_002079_020 0.3444125801 - - -
16 Hb_000204_020 0.3451594566 transcription factor TF Family: GNAT PREDICTED: uncharacterized N-acetyltransferase ycf52 [Jatropha curcas]
17 Hb_000640_110 0.3454047442 - - -
18 Hb_075745_010 0.3460353998 - - hypothetical protein EUGRSUZ_D00579 [Eucalyptus grandis]
19 Hb_007534_020 0.3483589711 - - -
20 Hb_079993_010 0.3486044924 - - PREDICTED: uncharacterized protein LOC103336399 [Prunus mume]

Gene co-expression network

sample Hb_012094_030 Hb_012094_030 Hb_006065_040 Hb_006065_040 Hb_012094_030--Hb_006065_040 Hb_071079_050 Hb_071079_050 Hb_012094_030--Hb_071079_050 Hb_069868_010 Hb_069868_010 Hb_012094_030--Hb_069868_010 Hb_003695_010 Hb_003695_010 Hb_012094_030--Hb_003695_010 Hb_000252_140 Hb_000252_140 Hb_012094_030--Hb_000252_140 Hb_143800_010 Hb_143800_010 Hb_012094_030--Hb_143800_010 Hb_007534_020 Hb_007534_020 Hb_006065_040--Hb_007534_020 Hb_000668_020 Hb_000668_020 Hb_006065_040--Hb_000668_020 Hb_001584_320 Hb_001584_320 Hb_006065_040--Hb_001584_320 Hb_000086_190 Hb_000086_190 Hb_006065_040--Hb_000086_190 Hb_003029_100 Hb_003029_100 Hb_006065_040--Hb_003029_100 Hb_015026_150 Hb_015026_150 Hb_006065_040--Hb_015026_150 Hb_001907_090 Hb_001907_090 Hb_071079_050--Hb_001907_090 Hb_011639_090 Hb_011639_090 Hb_071079_050--Hb_011639_090 Hb_000684_480 Hb_000684_480 Hb_071079_050--Hb_000684_480 Hb_000926_350 Hb_000926_350 Hb_071079_050--Hb_000926_350 Hb_007188_050 Hb_007188_050 Hb_071079_050--Hb_007188_050 Hb_003621_010 Hb_003621_010 Hb_069868_010--Hb_003621_010 Hb_000800_100 Hb_000800_100 Hb_069868_010--Hb_000800_100 Hb_069868_010--Hb_000252_140 Hb_008202_030 Hb_008202_030 Hb_069868_010--Hb_008202_030 Hb_157340_010 Hb_157340_010 Hb_069868_010--Hb_157340_010 Hb_002046_030 Hb_002046_030 Hb_069868_010--Hb_002046_030 Hb_000981_040 Hb_000981_040 Hb_003695_010--Hb_000981_040 Hb_116632_010 Hb_116632_010 Hb_003695_010--Hb_116632_010 Hb_017462_010 Hb_017462_010 Hb_003695_010--Hb_017462_010 Hb_000204_020 Hb_000204_020 Hb_003695_010--Hb_000204_020 Hb_013818_050 Hb_013818_050 Hb_003695_010--Hb_013818_050 Hb_000289_080 Hb_000289_080 Hb_003695_010--Hb_000289_080 Hb_001377_390 Hb_001377_390 Hb_000252_140--Hb_001377_390 Hb_014556_020 Hb_014556_020 Hb_000252_140--Hb_014556_020 Hb_062135_010 Hb_062135_010 Hb_000252_140--Hb_062135_010 Hb_000359_240 Hb_000359_240 Hb_000252_140--Hb_000359_240 Hb_003554_020 Hb_003554_020 Hb_000252_140--Hb_003554_020 Hb_063480_010 Hb_063480_010 Hb_143800_010--Hb_063480_010 Hb_000415_070 Hb_000415_070 Hb_143800_010--Hb_000415_070 Hb_151939_010 Hb_151939_010 Hb_143800_010--Hb_151939_010 Hb_000640_110 Hb_000640_110 Hb_143800_010--Hb_000640_110 Hb_000136_180 Hb_000136_180 Hb_143800_010--Hb_000136_180 Hb_005542_090 Hb_005542_090 Hb_143800_010--Hb_005542_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0.031373 0 0.12399
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0591397 0 0.0240093 0

CAGE analysis