Hb_003554_020

Information

Type -
Description -
Location Contig3554: 7149-11808
Sequence    

Annotation

kegg
ID rcu:RCOM_1329890
description TMV resistance protein N, putative
nr
ID KDP31608.1
description hypothetical protein JCGZ_14833 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067K9B1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14833 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003554_020 0.0 - - hypothetical protein JCGZ_14833 [Jatropha curcas]
2 Hb_001377_390 0.2243282649 - - hypothetical protein POPTR_0002s17390g [Populus trichocarpa]
3 Hb_014556_020 0.2280747329 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
4 Hb_000252_140 0.2441268982 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
5 Hb_156635_050 0.2562719742 - - hypothetical protein JCGZ_01613 [Jatropha curcas]
6 Hb_000359_240 0.2768925425 - - PREDICTED: uncharacterized protein LOC105646039 [Jatropha curcas]
7 Hb_062135_010 0.278661331 - - hypothetical protein POPTR_0011s036602g, partial [Populus trichocarpa]
8 Hb_000330_180 0.3169159531 - - -
9 Hb_002641_110 0.341030215 - - PREDICTED: uncharacterized protein LOC103448574 [Malus domestica]
10 Hb_000173_300 0.3465602898 - - PREDICTED: uncharacterized protein LOC105631894 [Jatropha curcas]
11 Hb_026113_020 0.3472495122 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
12 Hb_006684_020 0.3475066211 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
13 Hb_000976_220 0.3485898639 - - PREDICTED: protein ALTERED XYLOGLUCAN 4-like [Jatropha curcas]
14 Hb_127120_010 0.3485958897 - - hypothetical protein POPTR_0011s01952g [Populus trichocarpa]
15 Hb_007407_030 0.3486182176 - - hypothetical protein JCGZ_23510 [Jatropha curcas]
16 Hb_000529_120 0.3491935034 - - PREDICTED: uncharacterized protein LOC105641745 [Jatropha curcas]
17 Hb_007426_240 0.352535499 - - -
18 Hb_000092_210 0.3624310168 - - -
19 Hb_000025_130 0.3706990379 - - -
20 Hb_023813_010 0.3722304393 - - PREDICTED: uncharacterized protein LOC105162193 [Sesamum indicum]

Gene co-expression network

sample Hb_003554_020 Hb_003554_020 Hb_001377_390 Hb_001377_390 Hb_003554_020--Hb_001377_390 Hb_014556_020 Hb_014556_020 Hb_003554_020--Hb_014556_020 Hb_000252_140 Hb_000252_140 Hb_003554_020--Hb_000252_140 Hb_156635_050 Hb_156635_050 Hb_003554_020--Hb_156635_050 Hb_000359_240 Hb_000359_240 Hb_003554_020--Hb_000359_240 Hb_062135_010 Hb_062135_010 Hb_003554_020--Hb_062135_010 Hb_001377_390--Hb_014556_020 Hb_001377_390--Hb_000252_140 Hb_001377_390--Hb_000359_240 Hb_001377_390--Hb_062135_010 Hb_010320_030 Hb_010320_030 Hb_001377_390--Hb_010320_030 Hb_014556_020--Hb_000359_240 Hb_014556_020--Hb_062135_010 Hb_014556_020--Hb_000252_140 Hb_014556_020--Hb_010320_030 Hb_000252_140--Hb_062135_010 Hb_000252_140--Hb_000359_240 Hb_069868_010 Hb_069868_010 Hb_000252_140--Hb_069868_010 Hb_000330_180 Hb_000330_180 Hb_156635_050--Hb_000330_180 Hb_007524_050 Hb_007524_050 Hb_156635_050--Hb_007524_050 Hb_007189_020 Hb_007189_020 Hb_156635_050--Hb_007189_020 Hb_001221_010 Hb_001221_010 Hb_156635_050--Hb_001221_010 Hb_000181_040 Hb_000181_040 Hb_156635_050--Hb_000181_040 Hb_000359_240--Hb_062135_010 Hb_000359_240--Hb_010320_030 Hb_085636_010 Hb_085636_010 Hb_000359_240--Hb_085636_010 Hb_062135_010--Hb_010320_030 Hb_062135_010--Hb_085636_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0.0216631 0.0711181
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.116666 0 0.031263 0

CAGE analysis