Hb_000330_180

Information

Type -
Description -
Location Contig330: 161001-162694
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000330_180 0.0 - - -
2 Hb_007189_020 0.197615954 - - PREDICTED: uncharacterized protein LOC105629655 [Jatropha curcas]
3 Hb_156635_050 0.2559191113 - - hypothetical protein JCGZ_01613 [Jatropha curcas]
4 Hb_003554_020 0.3169159531 - - hypothetical protein JCGZ_14833 [Jatropha curcas]
5 Hb_155932_010 0.338535573 - - PREDICTED: uncharacterized protein LOC105786773 [Gossypium raimondii]
6 Hb_000181_040 0.341817241 transcription factor TF Family: NAC PREDICTED: protein CUP-SHAPED COTYLEDON 2 [Jatropha curcas]
7 Hb_179763_020 0.3538808886 - - -
8 Hb_001263_020 0.3632704409 - - -
9 Hb_012656_010 0.3632715226 - - -
10 Hb_000487_390 0.3633010331 - - PREDICTED: putative pumilio homolog 21 [Jatropha curcas]
11 Hb_003812_010 0.3634063542 - - -
12 Hb_022500_010 0.3646820438 - - -
13 Hb_002609_180 0.3653674277 - - -
14 Hb_001754_220 0.3680555274 - - -
15 Hb_000917_250 0.3731878941 - - PREDICTED: coiled-coil domain-containing protein 130-like [Populus euphratica]
16 Hb_019654_160 0.3825745234 - - Zinc finger protein GIS2 [Medicago truncatula]
17 Hb_012799_090 0.3829989828 - - PREDICTED: pentatricopeptide repeat-containing protein At3g29230-like [Jatropha curcas]
18 Hb_000866_160 0.3852698534 - - PREDICTED: elicitor-responsive protein 3 [Populus euphratica]
19 Hb_031089_060 0.3857590744 - - -
20 Hb_127120_010 0.3861150042 - - hypothetical protein POPTR_0011s01952g [Populus trichocarpa]

Gene co-expression network

sample Hb_000330_180 Hb_000330_180 Hb_007189_020 Hb_007189_020 Hb_000330_180--Hb_007189_020 Hb_156635_050 Hb_156635_050 Hb_000330_180--Hb_156635_050 Hb_003554_020 Hb_003554_020 Hb_000330_180--Hb_003554_020 Hb_155932_010 Hb_155932_010 Hb_000330_180--Hb_155932_010 Hb_000181_040 Hb_000181_040 Hb_000330_180--Hb_000181_040 Hb_179763_020 Hb_179763_020 Hb_000330_180--Hb_179763_020 Hb_000917_250 Hb_000917_250 Hb_007189_020--Hb_000917_250 Hb_007189_020--Hb_000181_040 Hb_007189_020--Hb_155932_010 Hb_031089_060 Hb_031089_060 Hb_007189_020--Hb_031089_060 Hb_000866_160 Hb_000866_160 Hb_007189_020--Hb_000866_160 Hb_156635_050--Hb_003554_020 Hb_007524_050 Hb_007524_050 Hb_156635_050--Hb_007524_050 Hb_156635_050--Hb_007189_020 Hb_001221_010 Hb_001221_010 Hb_156635_050--Hb_001221_010 Hb_156635_050--Hb_000181_040 Hb_001377_390 Hb_001377_390 Hb_003554_020--Hb_001377_390 Hb_014556_020 Hb_014556_020 Hb_003554_020--Hb_014556_020 Hb_000252_140 Hb_000252_140 Hb_003554_020--Hb_000252_140 Hb_000359_240 Hb_000359_240 Hb_003554_020--Hb_000359_240 Hb_062135_010 Hb_062135_010 Hb_003554_020--Hb_062135_010 Hb_000246_140 Hb_000246_140 Hb_155932_010--Hb_000246_140 Hb_003636_050 Hb_003636_050 Hb_155932_010--Hb_003636_050 Hb_136856_010 Hb_136856_010 Hb_155932_010--Hb_136856_010 Hb_021068_020 Hb_021068_020 Hb_155932_010--Hb_021068_020 Hb_009066_010 Hb_009066_010 Hb_155932_010--Hb_009066_010 Hb_068347_020 Hb_068347_020 Hb_155932_010--Hb_068347_020 Hb_149731_010 Hb_149731_010 Hb_000181_040--Hb_149731_010 Hb_000236_270 Hb_000236_270 Hb_000181_040--Hb_000236_270 Hb_058884_010 Hb_058884_010 Hb_000181_040--Hb_058884_010 Hb_000181_040--Hb_000917_250 Hb_000181_040--Hb_155932_010 Hb_123915_050 Hb_123915_050 Hb_179763_020--Hb_123915_050 Hb_000227_030 Hb_000227_030 Hb_179763_020--Hb_000227_030 Hb_002188_100 Hb_002188_100 Hb_179763_020--Hb_002188_100 Hb_000563_220 Hb_000563_220 Hb_179763_020--Hb_000563_220 Hb_039635_010 Hb_039635_010 Hb_179763_020--Hb_039635_010 Hb_000463_050 Hb_000463_050 Hb_179763_020--Hb_000463_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0.073943 0.0662474
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.135604 0 0 0

CAGE analysis