Hb_000181_040

Information

Type transcription factor
Description TF Family: NAC
Location Contig181: 25916-27815
Sequence    

Annotation

kegg
ID rcu:RCOM_0124680
description transcription factor, putative
nr
ID XP_012076310.1
description PREDICTED: protein CUP-SHAPED COTYLEDON 2 [Jatropha curcas]
swissprot
ID O04017
description Protein CUP-SHAPED COTYLEDON 2 OS=Arabidopsis thaliana GN=NAC098 PE=1 SV=1
trembl
ID R4NHI9
description NAC transcription factor 004 OS=Jatropha curcas GN=JCGZ_15306 PE=4 SV=1
Gene Ontology
ID GO:0003677
description protein cup-shaped cotyledon 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17487: 25902-26230
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000181_040 0.0 transcription factor TF Family: NAC PREDICTED: protein CUP-SHAPED COTYLEDON 2 [Jatropha curcas]
2 Hb_149731_010 0.2690444762 - - -
3 Hb_007189_020 0.2739111926 - - PREDICTED: uncharacterized protein LOC105629655 [Jatropha curcas]
4 Hb_000236_270 0.2748609267 - - ATP-binding cassette transporter, putative [Ricinus communis]
5 Hb_058884_010 0.3067740047 - - PREDICTED: barwin-like [Jatropha curcas]
6 Hb_000917_250 0.3201688317 - - PREDICTED: coiled-coil domain-containing protein 130-like [Populus euphratica]
7 Hb_155932_010 0.3232614551 - - PREDICTED: uncharacterized protein LOC105786773 [Gossypium raimondii]
8 Hb_009780_090 0.3277953409 - - PREDICTED: pentatricopeptide repeat-containing protein At1g66345, mitochondrial [Jatropha curcas]
9 Hb_024505_030 0.3279179375 - - PREDICTED: aspartate aminotransferase, chloroplastic [Jatropha curcas]
10 Hb_179763_010 0.3281300729 - - -
11 Hb_000330_180 0.341817241 - - -
12 Hb_001773_020 0.3426100401 - - hypothetical protein POPTR_0016s00980g [Populus trichocarpa]
13 Hb_043629_020 0.3467354299 - - hypothetical protein POPTR_0009s13360g [Populus trichocarpa]
14 Hb_002188_100 0.3474269472 - - conserved hypothetical protein [Ricinus communis]
15 Hb_074152_010 0.3487666096 - - -
16 Hb_002639_070 0.3491438147 - - PREDICTED: uncharacterized protein LOC105635265 [Jatropha curcas]
17 Hb_083569_010 0.3514791619 - - -
18 Hb_179763_020 0.3517978165 - - -
19 Hb_025299_010 0.3529347239 - - hypothetical protein JCGZ_01062 [Jatropha curcas]
20 Hb_123915_050 0.3539261365 - - hypothetical protein B456_002G103400 [Gossypium raimondii]

Gene co-expression network

sample Hb_000181_040 Hb_000181_040 Hb_149731_010 Hb_149731_010 Hb_000181_040--Hb_149731_010 Hb_007189_020 Hb_007189_020 Hb_000181_040--Hb_007189_020 Hb_000236_270 Hb_000236_270 Hb_000181_040--Hb_000236_270 Hb_058884_010 Hb_058884_010 Hb_000181_040--Hb_058884_010 Hb_000917_250 Hb_000917_250 Hb_000181_040--Hb_000917_250 Hb_155932_010 Hb_155932_010 Hb_000181_040--Hb_155932_010 Hb_000088_030 Hb_000088_030 Hb_149731_010--Hb_000088_030 Hb_149731_010--Hb_000236_270 Hb_010603_030 Hb_010603_030 Hb_149731_010--Hb_010603_030 Hb_000038_150 Hb_000038_150 Hb_149731_010--Hb_000038_150 Hb_074152_010 Hb_074152_010 Hb_149731_010--Hb_074152_010 Hb_000330_180 Hb_000330_180 Hb_007189_020--Hb_000330_180 Hb_007189_020--Hb_000917_250 Hb_007189_020--Hb_155932_010 Hb_031089_060 Hb_031089_060 Hb_007189_020--Hb_031089_060 Hb_000866_160 Hb_000866_160 Hb_007189_020--Hb_000866_160 Hb_005116_020 Hb_005116_020 Hb_000236_270--Hb_005116_020 Hb_000236_270--Hb_074152_010 Hb_013983_010 Hb_013983_010 Hb_000236_270--Hb_013983_010 Hb_000236_270--Hb_010603_030 Hb_029866_010 Hb_029866_010 Hb_000236_270--Hb_029866_010 Hb_000236_270--Hb_000038_150 Hb_041774_010 Hb_041774_010 Hb_058884_010--Hb_041774_010 Hb_003073_130 Hb_003073_130 Hb_058884_010--Hb_003073_130 Hb_087340_010 Hb_087340_010 Hb_058884_010--Hb_087340_010 Hb_053543_010 Hb_053543_010 Hb_058884_010--Hb_053543_010 Hb_001668_030 Hb_001668_030 Hb_058884_010--Hb_001668_030 Hb_000384_040 Hb_000384_040 Hb_058884_010--Hb_000384_040 Hb_000917_250--Hb_074152_010 Hb_001773_020 Hb_001773_020 Hb_000917_250--Hb_001773_020 Hb_000326_020 Hb_000326_020 Hb_000917_250--Hb_000326_020 Hb_006045_060 Hb_006045_060 Hb_000917_250--Hb_006045_060 Hb_000917_250--Hb_000236_270 Hb_000246_140 Hb_000246_140 Hb_155932_010--Hb_000246_140 Hb_003636_050 Hb_003636_050 Hb_155932_010--Hb_003636_050 Hb_136856_010 Hb_136856_010 Hb_155932_010--Hb_136856_010 Hb_021068_020 Hb_021068_020 Hb_155932_010--Hb_021068_020 Hb_009066_010 Hb_009066_010 Hb_155932_010--Hb_009066_010 Hb_068347_020 Hb_068347_020 Hb_155932_010--Hb_068347_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0207739 0 0 0 0.234995 0.164571
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.112171 0 0.0450548 0

CAGE analysis