Hb_087340_010

Information

Type -
Description -
Location Contig87340: 3-808
Sequence    

Annotation

kegg
ID rcu:RCOM_0189850
description hypothetical protein
nr
ID XP_002531967.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9T149
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0189850 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_087340_010 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000384_040 0.2007126766 - - PREDICTED: uncharacterized protein LOC105640093 [Jatropha curcas]
3 Hb_058884_010 0.2468815512 - - PREDICTED: barwin-like [Jatropha curcas]
4 Hb_001678_020 0.2537429556 - - PREDICTED: uncharacterized protein LOC105160092 [Sesamum indicum]
5 Hb_007101_200 0.2723551459 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 22 isoform X1 [Jatropha curcas]
6 Hb_023323_010 0.2729375004 - - PREDICTED: uncharacterized protein LOC104901296 [Beta vulgaris subsp. vulgaris]
7 Hb_002233_090 0.2735271585 - - PREDICTED: bromodomain-containing protein 3 [Jatropha curcas]
8 Hb_006846_090 0.2975536347 - - PREDICTED: uncharacterized protein LOC105648695 [Jatropha curcas]
9 Hb_002506_100 0.2997313798 - - PREDICTED: uncharacterized protein LOC105641759 isoform X2 [Jatropha curcas]
10 Hb_008725_150 0.3000373976 - - endo-1,4-beta-glucanase, putative [Ricinus communis]
11 Hb_002400_100 0.3021325748 - - PREDICTED: putative UDP-sugar transporter DDB_G0278631 isoform X1 [Jatropha curcas]
12 Hb_005228_110 0.3022691857 - - Cleavage and polyadenylation specificity factor subunit 3 [Fukomys damarensis]
13 Hb_010620_010 0.3048471938 - - hypothetical protein JCGZ_22570 [Jatropha curcas]
14 Hb_005989_010 0.307146 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103696607 [Phoenix dactylifera]
15 Hb_009973_020 0.3083906588 - - PREDICTED: uncharacterized protein LOC104889111 [Beta vulgaris subsp. vulgaris]
16 Hb_079738_010 0.3099750753 - - hypothetical protein CISIN_1g036582mg, partial [Citrus sinensis]
17 Hb_002311_250 0.3101582379 - - hypothetical protein JCGZ_18936 [Jatropha curcas]
18 Hb_007416_370 0.3108296518 - - conserved hypothetical protein [Ricinus communis]
19 Hb_004767_090 0.3122831256 - - Aspartic proteinase Asp1 precursor, putative [Ricinus communis]
20 Hb_006816_170 0.313401776 - - PREDICTED: pyrophosphate-energized vacuolar membrane proton pump 1-like [Jatropha curcas]

Gene co-expression network

sample Hb_087340_010 Hb_087340_010 Hb_000384_040 Hb_000384_040 Hb_087340_010--Hb_000384_040 Hb_058884_010 Hb_058884_010 Hb_087340_010--Hb_058884_010 Hb_001678_020 Hb_001678_020 Hb_087340_010--Hb_001678_020 Hb_007101_200 Hb_007101_200 Hb_087340_010--Hb_007101_200 Hb_023323_010 Hb_023323_010 Hb_087340_010--Hb_023323_010 Hb_002233_090 Hb_002233_090 Hb_087340_010--Hb_002233_090 Hb_000384_040--Hb_002233_090 Hb_002400_100 Hb_002400_100 Hb_000384_040--Hb_002400_100 Hb_000025_310 Hb_000025_310 Hb_000384_040--Hb_000025_310 Hb_103494_010 Hb_103494_010 Hb_000384_040--Hb_103494_010 Hb_000384_040--Hb_001678_020 Hb_041774_010 Hb_041774_010 Hb_058884_010--Hb_041774_010 Hb_003073_130 Hb_003073_130 Hb_058884_010--Hb_003073_130 Hb_053543_010 Hb_053543_010 Hb_058884_010--Hb_053543_010 Hb_001668_030 Hb_001668_030 Hb_058884_010--Hb_001668_030 Hb_058884_010--Hb_000384_040 Hb_000101_160 Hb_000101_160 Hb_001678_020--Hb_000101_160 Hb_010620_010 Hb_010620_010 Hb_001678_020--Hb_010620_010 Hb_000103_360 Hb_000103_360 Hb_001678_020--Hb_000103_360 Hb_001678_020--Hb_023323_010 Hb_001678_020--Hb_002233_090 Hb_003206_020 Hb_003206_020 Hb_007101_200--Hb_003206_020 Hb_000832_130 Hb_000832_130 Hb_007101_200--Hb_000832_130 Hb_000951_110 Hb_000951_110 Hb_007101_200--Hb_000951_110 Hb_000959_090 Hb_000959_090 Hb_007101_200--Hb_000959_090 Hb_000136_040 Hb_000136_040 Hb_007101_200--Hb_000136_040 Hb_009543_020 Hb_009543_020 Hb_007101_200--Hb_009543_020 Hb_005989_010 Hb_005989_010 Hb_023323_010--Hb_005989_010 Hb_009973_020 Hb_009973_020 Hb_023323_010--Hb_009973_020 Hb_047661_010 Hb_047661_010 Hb_023323_010--Hb_047661_010 Hb_000322_110 Hb_000322_110 Hb_023323_010--Hb_000322_110 Hb_005656_060 Hb_005656_060 Hb_023323_010--Hb_005656_060 Hb_109168_010 Hb_109168_010 Hb_002233_090--Hb_109168_010 Hb_001959_050 Hb_001959_050 Hb_002233_090--Hb_001959_050 Hb_000395_140 Hb_000395_140 Hb_002233_090--Hb_000395_140 Hb_001040_170 Hb_001040_170 Hb_002233_090--Hb_001040_170 Hb_006091_030 Hb_006091_030 Hb_002233_090--Hb_006091_030 Hb_000926_120 Hb_000926_120 Hb_002233_090--Hb_000926_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0322729 0.108483 0.0258287 0 1.45535 0.871939
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.233966 0.315182 0.261125 0.233033

CAGE analysis